GR913440

EST Overview
NameGR913440
Unique NameGR913440
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length467
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of GR913440 vs. TrEMBL
Match: B9ND00_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_591382 PE=4 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 4.828e-19
Identity = 64/149 (42.95%), Postives = 86/149 (57.72%), Query Frame = 1
Query:   19 GQVLKRPLTVAFKGDKQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXLPKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSPTSDVCNADYIDCKIKRVSRRGKKIGDVSKEELDNDR--VVRNQNVKAKRLDLDERIALKKNNSE 459
            G   KRPL VAFK DK N+T+LVA  E+I + V+                 + + V TE + P +L VDYNEAAA LENIYKLSP +D  + +     I+R  +R +KI +  KE  D     +VRN+  KAKRL L++RI+L+  N E
Sbjct:   25 GSTAKRPLIVAFKADKSNNTSLVAPHEQIPLPVETTKGKKRLGKSKKS-SNRLKAVRTEVS-PCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDASGVIRRGRQRKRKISEGGKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNEE 171          
BLAST of GR913440 vs. TrEMBL
Match: B9N985_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1118310 PE=4 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 1.075e-18
Identity = 60/145 (41.38%), Postives = 82/145 (56.55%), Query Frame = 1
Query:   31 KRPLTVAFKGDKQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXLPKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSPTSDVCNADYIDCKIKRVSRRGKKIGDVSKEE--LDNDRVVRNQNVKAKRLDLDERIALKKNNSE 459
            KRPL VAFK DK N+T LVA  E+I + ++                +   V    E  P +L VDYNEAAA LENIYKLSP +D  + + ++  I+R  +R +K  +  KE+    +  +VRNQ  KAKRL L +RIAL+  + E
Sbjct:   29 KRPLIVAFKADKSNETALVAPHEQIPLPIETTKEKKRRGKSKKSSDRLKAV--RTEVSPCTLGVDYNEAAAKLENIYKLSPGTDTSDVEDVNGVIRRCRQRKRKTSECEKEDDGRTSKIIVRNQAKKAKRLSLQKRIALRIKSDE 171          
BLAST of GR913440 vs. TrEMBL
Match: B9RIL8_RICCO (RNA polymerase sigma factor rpoD, putative OS=Ricinus communis GN=RCOM_1580440 PE=4 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.396e-18
Identity = 62/147 (42.18%), Postives = 82/147 (55.78%), Query Frame = 1
Query:   28 LKRPLTVAFKGDKQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXLPKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSPTSDVCNADYIDCKIKRVSRRGKKI--GDVSKEELDNDRVVRNQNVKAKRLDLDERIALKKNNSED 462
            +KR L VAFK DK ND  LV  +E+  + ++                KK R     E    +L+VDYNEAAA LENIYKLSP +D  + D I+  I++  +R +K   GD   E   +  +VRN+  K KRL LD+RIALKKN  E+
Sbjct:   28 VKRSLVVAFKEDKANDIILVPPRERTPLPIETSKG------------KKRRGKTNREVSSGTLEVDYNEAAAKLENIYKLSPATDTSDVD-INGLIRKGRQRKRKTGEGDEKAENRTSRTIVRNRAKKTKRLSLDKRIALKKNEEEE 161          
BLAST of GR913440 vs. TrEMBL
Match: Q9ZNX9_ARATH (AT5G24120 protein OS=Arabidopsis thaliana GN=sig5 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.663e-11
Identity = 59/150 (39.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   28 LKRPLTVAFKGD-KQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXL--PKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSP-TSDVCNADYIDCKIK-RVSRRGKKIGDVSKEELDNDRVVRNQNV-KAKRLDLDERIALKKNNSE 459
            LK+P  VAFK D   N   ++  +E++L+  +                 PKK   +        SL VDYNEAAA LE+IYKLSP T+ +   D  D   K +VSRR K+     KE  +  +VV   NV K KR+ LD+RIALK+N  E
Sbjct:   28 LKKPSIVAFKADDSSNSALIIPPREQVLIPAEKHNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVEDDVEDGGSKAKVSRRRKR-----KESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQE 172          
BLAST of GR913440 vs. TrEMBL
Match: Q94AW4_ARATH (AT5g24120/MLE8_4 (Fragment) OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.663e-11
Identity = 59/150 (39.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   28 LKRPLTVAFKGD-KQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXL--PKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSP-TSDVCNADYIDCKIK-RVSRRGKKIGDVSKEELDNDRVVRNQNV-KAKRLDLDERIALKKNNSE 459
            LK+P  VAFK D   N   ++  +E++L+  +                 PKK   +        SL VDYNEAAA LE+IYKLSP T+ +   D  D   K +VSRR K+     KE  +  +VV   NV K KR+ LD+RIALK+N  E
Sbjct:   28 LKKPSIVAFKADDSSNSALIIPPREQVLIPAEKHNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVEDDVEDGGSKAKVSRRRKR-----KESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQE 172          
BLAST of GR913440 vs. TrEMBL
Match: Q56Y78_ARATH (Sigma-like factor (Fragment) OS=Arabidopsis thaliana GN=At5g24120 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 1.663e-11
Identity = 59/150 (39.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   28 LKRPLTVAFKGD-KQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXL--PKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSP-TSDVCNADYIDCKIK-RVSRRGKKIGDVSKEELDNDRVVRNQNV-KAKRLDLDERIALKKNNSE 459
            LK+P  VAFK D   N   ++  +E++L+  +                 PKK   +        SL VDYNEAAA LE+IYKLSP T+ +   D  D   K +VSRR K+     KE  +  +VV   NV K KR+ LD+RIALK+N  E
Sbjct:   28 LKKPSIVAFKADDSSNSALIIPPREQVLIPAEKHNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVEDDVEDGGSKAKVSRRRKR-----KESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQE 172          
BLAST of GR913440 vs. TrEMBL
Match: D7M2H3_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489269 PE=4 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 8.254e-11
Identity = 54/150 (36.00%), Postives = 74/150 (49.33%), Query Frame = 1
Query:   28 LKRPLTVAFKGD-KQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXL--PKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSPTSDVCNADYID---CKIKRVSRRGKKIGDVSKEELDNDRVVRNQNVKAKRLDLDERIALKKNNSE 459
            LK+P  VAFK D   N   ++  +E++L+  +                 PKK   +        SL VDY EAAA LE+IYKLSP +   + + ++    K K   RR +K     K+      VVRN  +K KRL LD+RIALK+N  E
Sbjct:   28 LKKPSIVAFKADDSSNSALIIPPREQVLIPAEKHNEKKRVVTRRKPCKAPKKPSSLEHNSAPSCSLGVDYYEAAARLESIYKLSPATTTLDEEDVEDGGSKAKVSPRRKRKQSGEEKKV-----VVRNNVMKEKRLSLDKRIALKRNVQE 172          
BLAST of GR913440 vs. TAIR peptide
Match: AT5G24120.1 (| Symbols: SIGE, SIG5, ATSIG5 | sigma factor E | chr5:8157794-8159746 REVERSE LENGTH=517)

HSP 1 Score: 72.4034 bits (176), Expect = 1.258e-13
Identity = 59/150 (39.33%), Postives = 78/150 (52.00%), Query Frame = 1
Query:   28 LKRPLTVAFKGD-KQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXL--PKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSP-TSDVCNADYIDCKIK-RVSRRGKKIGDVSKEELDNDRVVRNQNV-KAKRLDLDERIALKKNNSE 459
            LK+P  VAFK D   N   ++  +E++L+  +                 PKK   +        SL VDYNEAAA LE+IYKLSP T+ +   D  D   K +VSRR K+     KE  +  +VV   NV K KR+ LD+RIALK+N  E
Sbjct:   28 LKKPSIVAFKADDSSNSALIIPPREQVLIPAEKHNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVEDDVEDGGSKAKVSRRRKR-----KESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQE 172          
The following BLAST results are available for this feature:
BLAST of GR913440 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 7
Match NameE-valueIdentityDescription
B9ND00_POPTR4.828e-1942.95Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9N985_POPTR1.075e-1841.38Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9RIL8_RICCO2.396e-1842.18RNA polymerase sigma factor rpoD, putative OS=Rici... [more]
Q9ZNX9_ARATH1.663e-1139.33AT5G24120 protein OS=Arabidopsis thaliana GN=sig5 ... [more]
Q94AW4_ARATH1.663e-1139.33AT5g24120/MLE8_4 (Fragment) OS=Arabidopsis thalian... [more]
Q56Y78_ARATH1.663e-1139.33Sigma-like factor (Fragment) OS=Arabidopsis thalia... [more]
D7M2H3_ARALY8.254e-1136.00Putative uncharacterized protein OS=Arabidopsis ly... [more]
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BLAST of GR913440 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT5G24120.11.258e-1339.33| Symbols: SIGE, SIG5, ATSIG5 | sigma factor E | c... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 41..54
score
NoneNo IPR availableSEGsegsegcoord: 27..40
score

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR913440 ID=GR913440; Name=GR913440; organism=Cicer arietinum; type=EST; length=467bp
GATTTCGAGCGGCCGCCCGGGCAGGTACTGAAGAGACCTTTAACAGTAGC
ATTTAAAGGAGATAAACAGAATGATACTACTTTGGTTGCAACTCAAGAGA
AAATTCTTATGCAAGTTGATACAGCCAAGACACACAAGAAAAGGATAGCG
AAAACCAAAAAACTACCTAAGAAAGCAAGAGTGGTCTTCACAGAGGAAAC
TTTTCCGTCTTCATTGGATGTAGACTATAATGAAGCTGCTGCGATACTTG
AAAATATATACAAACTTAGCCCGACATCTGATGTATGTAATGCAGACTAT
ATAGATTGTAAGATCAAAAGAGTCTCTCGAAGGGGTAAGAAGATTGGTGA
TGTAAGTAAAGAGGAGTTAGACAATGATAGGGTAGTCAGAAACCAGAATG
TGAAAGCCAAACGATTGGATCTTGATGAGAGGATTGCATTAAAAAAGAAC
AATAGTGAAGATGCAAT
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