GR913440
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR913440 vs. TrEMBL
Match: B9ND00_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_591382 PE=4 SV=1) HSP 1 Score: 97.4413 bits (241), Expect = 4.828e-19 Identity = 64/149 (42.95%), Postives = 86/149 (57.72%), Query Frame = 1 Query: 19 GQVLKRPLTVAFKGDKQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXLPKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSPTSDVCNADYIDCKIKRVSRRGKKIGDVSKEELDNDR--VVRNQNVKAKRLDLDERIALKKNNSE 459 G KRPL VAFK DK N+T+LVA E+I + V+ + + V TE + P +L VDYNEAAA LENIYKLSP +D + + I+R +R +KI + KE D +VRN+ KAKRL L++RI+L+ N E Sbjct: 25 GSTAKRPLIVAFKADKSNNTSLVAPHEQIPLPVETTKGKKRLGKSKKS-SNRLKAVRTEVS-PCTLLVDYNEAAAKLENIYKLSPGTDTSDVEDASGVIRRGRQRKRKISEGGKETEDRTGKIIVRNRAKKAKRLSLEKRISLRIKNEE 171
BLAST of GR913440 vs. TrEMBL
Match: B9N985_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1118310 PE=4 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 1.075e-18 Identity = 60/145 (41.38%), Postives = 82/145 (56.55%), Query Frame = 1 Query: 31 KRPLTVAFKGDKQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXLPKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSPTSDVCNADYIDCKIKRVSRRGKKIGDVSKEE--LDNDRVVRNQNVKAKRLDLDERIALKKNNSE 459 KRPL VAFK DK N+T LVA E+I + ++ + V E P +L VDYNEAAA LENIYKLSP +D + + ++ I+R +R +K + KE+ + +VRNQ KAKRL L +RIAL+ + E Sbjct: 29 KRPLIVAFKADKSNETALVAPHEQIPLPIETTKEKKRRGKSKKSSDRLKAV--RTEVSPCTLGVDYNEAAAKLENIYKLSPGTDTSDVEDVNGVIRRCRQRKRKTSECEKEDDGRTSKIIVRNQAKKAKRLSLQKRIALRIKSDE 171
BLAST of GR913440 vs. TrEMBL
Match: B9RIL8_RICCO (RNA polymerase sigma factor rpoD, putative OS=Ricinus communis GN=RCOM_1580440 PE=4 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.396e-18 Identity = 62/147 (42.18%), Postives = 82/147 (55.78%), Query Frame = 1 Query: 28 LKRPLTVAFKGDKQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXLPKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSPTSDVCNADYIDCKIKRVSRRGKKI--GDVSKEELDNDRVVRNQNVKAKRLDLDERIALKKNNSED 462 +KR L VAFK DK ND LV +E+ + ++ KK R E +L+VDYNEAAA LENIYKLSP +D + D I+ I++ +R +K GD E + +VRN+ K KRL LD+RIALKKN E+ Sbjct: 28 VKRSLVVAFKEDKANDIILVPPRERTPLPIETSKG------------KKRRGKTNREVSSGTLEVDYNEAAAKLENIYKLSPATDTSDVD-INGLIRKGRQRKRKTGEGDEKAENRTSRTIVRNRAKKTKRLSLDKRIALKKNEEEE 161
BLAST of GR913440 vs. TrEMBL
Match: Q9ZNX9_ARATH (AT5G24120 protein OS=Arabidopsis thaliana GN=sig5 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.663e-11 Identity = 59/150 (39.33%), Postives = 78/150 (52.00%), Query Frame = 1 Query: 28 LKRPLTVAFKGD-KQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXL--PKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSP-TSDVCNADYIDCKIK-RVSRRGKKIGDVSKEELDNDRVVRNQNV-KAKRLDLDERIALKKNNSE 459 LK+P VAFK D N ++ +E++L+ + PKK + SL VDYNEAAA LE+IYKLSP T+ + D D K +VSRR K+ KE + +VV NV K KR+ LD+RIALK+N E Sbjct: 28 LKKPSIVAFKADDSSNSALIIPPREQVLIPAEKHNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVEDDVEDGGSKAKVSRRRKR-----KESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQE 172
BLAST of GR913440 vs. TrEMBL
Match: Q94AW4_ARATH (AT5g24120/MLE8_4 (Fragment) OS=Arabidopsis thaliana PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.663e-11 Identity = 59/150 (39.33%), Postives = 78/150 (52.00%), Query Frame = 1 Query: 28 LKRPLTVAFKGD-KQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXL--PKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSP-TSDVCNADYIDCKIK-RVSRRGKKIGDVSKEELDNDRVVRNQNV-KAKRLDLDERIALKKNNSE 459 LK+P VAFK D N ++ +E++L+ + PKK + SL VDYNEAAA LE+IYKLSP T+ + D D K +VSRR K+ KE + +VV NV K KR+ LD+RIALK+N E Sbjct: 28 LKKPSIVAFKADDSSNSALIIPPREQVLIPAEKHNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVEDDVEDGGSKAKVSRRRKR-----KESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQE 172
BLAST of GR913440 vs. TrEMBL
Match: Q56Y78_ARATH (Sigma-like factor (Fragment) OS=Arabidopsis thaliana GN=At5g24120 PE=2 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 1.663e-11 Identity = 59/150 (39.33%), Postives = 78/150 (52.00%), Query Frame = 1 Query: 28 LKRPLTVAFKGD-KQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXL--PKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSP-TSDVCNADYIDCKIK-RVSRRGKKIGDVSKEELDNDRVVRNQNV-KAKRLDLDERIALKKNNSE 459 LK+P VAFK D N ++ +E++L+ + PKK + SL VDYNEAAA LE+IYKLSP T+ + D D K +VSRR K+ KE + +VV NV K KR+ LD+RIALK+N E Sbjct: 28 LKKPSIVAFKADDSSNSALIIPPREQVLIPAEKHNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVEDDVEDGGSKAKVSRRRKR-----KESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQE 172
BLAST of GR913440 vs. TrEMBL
Match: D7M2H3_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_489269 PE=4 SV=1) HSP 1 Score: 70.0922 bits (170), Expect = 8.254e-11 Identity = 54/150 (36.00%), Postives = 74/150 (49.33%), Query Frame = 1 Query: 28 LKRPLTVAFKGD-KQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXL--PKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSPTSDVCNADYID---CKIKRVSRRGKKIGDVSKEELDNDRVVRNQNVKAKRLDLDERIALKKNNSE 459 LK+P VAFK D N ++ +E++L+ + PKK + SL VDY EAAA LE+IYKLSP + + + ++ K K RR +K K+ VVRN +K KRL LD+RIALK+N E Sbjct: 28 LKKPSIVAFKADDSSNSALIIPPREQVLIPAEKHNEKKRVVTRRKPCKAPKKPSSLEHNSAPSCSLGVDYYEAAARLESIYKLSPATTTLDEEDVEDGGSKAKVSPRRKRKQSGEEKKV-----VVRNNVMKEKRLSLDKRIALKRNVQE 172
BLAST of GR913440 vs. TAIR peptide
Match: AT5G24120.1 (| Symbols: SIGE, SIG5, ATSIG5 | sigma factor E | chr5:8157794-8159746 REVERSE LENGTH=517) HSP 1 Score: 72.4034 bits (176), Expect = 1.258e-13 Identity = 59/150 (39.33%), Postives = 78/150 (52.00%), Query Frame = 1 Query: 28 LKRPLTVAFKGD-KQNDTTLVATQEKILMQVDXXXXXXXXXXXXXXL--PKKARVVFTEETFPSSLDVDYNEAAAILENIYKLSP-TSDVCNADYIDCKIK-RVSRRGKKIGDVSKEELDNDRVVRNQNV-KAKRLDLDERIALKKNNSE 459 LK+P VAFK D N ++ +E++L+ + PKK + SL VDYNEAAA LE+IYKLSP T+ + D D K +VSRR K+ KE + +VV NV K KR+ LD+RIALK+N E Sbjct: 28 LKKPSIVAFKADDSSNSALIIPPREQVLIPAEKHNEKKREVTRRKPCKTPKKPLSLEHNSAPSCSLGVDYNEAAARLESIYKLSPATTTLVEDDVEDGGSKAKVSRRRKR-----KESGEEKKVVVRNNVKKEKRMSLDKRIALKRNVQE 172 The following BLAST results are available for this feature:
BLAST of GR913440 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 7
BLAST of GR913440 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR913440 ID=GR913440; Name=GR913440; organism=Cicer arietinum; type=EST; length=467bpback to top |