AJ005789

EST Overview
NameAJ005789
Unique NameAJ005789
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length770
Libraries
Library NameType
LIBEST_001193 chickpea mRNA CAN-5cdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Homology
BLAST of AJ005789 vs. SwissProt
Match: CPL1_ARATH (RNA polymerase II C-terminal domain phosphatase-like 1 OS=Arabidopsis thaliana GN=CPL1 PE=1 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 5.635e-22
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   24 DEVHAQVEIDGQVYGKGTGITWDEAKMQAAEKALGSLRTTIHGQGIQRRQLSPRPFQGLSNKRLKQEHPRTLQRFASSGRY 266
            DE+HAQVEIDG+V G+G G TWDEA+MQAAE+AL S+R+ + GQ + +RQ SPR F G+SNKRLK +  R+LQR  SSGRY
Sbjct:  887 DELHAQVEIDGRVVGEGVGSTWDEARMQAAERALSSVRSML-GQPLHKRQGSPRSFGGMSNKRLKPDFQRSLQRMPSSGRY 966          
BLAST of AJ005789 vs. TrEMBL
Match: B9N3C7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_670956 PE=4 SV=1)

HSP 1 Score: 135.576 bits (340), Expect = 4.567e-30
Identity = 70/98 (71.43%), Postives = 78/98 (79.59%), Query Frame = 3
Query:    3 PVSTNSV--DEVHAQVEIDGQVYGKGTGITWDEAKMQAAEKALGSLRTTIHGQGIQRRQLSPRPFQGLSNKRLKQEHPRTLQRFASSGRYPRNAPPIP 290
            P+S NS+  +EVHAQVEIDGQV GKG G TWDEAKMQAAEKALGSLR T+ GQ  Q+RQ SPRP QG+ NKRLKQE PR LQR   S RY +NAPP+P
Sbjct:  128 PLSANSIPGEEVHAQVEIDGQVLGKGIGSTWDEAKMQAAEKALGSLR-TMFGQYTQKRQGSPRPMQGMPNKRLKQEFPRVLQRMPPSARYHKNAPPVP 224          
BLAST of AJ005789 vs. TrEMBL
Match: B9H271_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_1075117 PE=4 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 6.594e-29
Identity = 69/98 (70.41%), Postives = 78/98 (79.59%), Query Frame = 3
Query:    3 PVSTNSV--DEVHAQVEIDGQVYGKGTGITWDEAKMQAAEKALGSLRTTIHGQGIQRRQLSPRPFQGLSNKRLKQEHPRTLQRFASSGRYPRNAPPIP 290
            P+STNS+  +EVHAQVEIDGQV GKG G+TWDEAKMQAAEKALGSLR T+ GQ   +RQ SPR  QG+ NKRLKQE PR LQR  SS RY +NA P+P
Sbjct:  871 PLSTNSIPGEEVHAQVEIDGQVLGKGIGLTWDEAKMQAAEKALGSLR-TMFGQYTPKRQGSPRLMQGMPNKRLKQEFPRVLQRMPSSARYHKNASPVP 967          
BLAST of AJ005789 vs. TrEMBL
Match: B9RZ63_RICCO (Double-stranded RNA binding protein, putative OS=Ricinus communis GN=RCOM_0935770 PE=4 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 1.244e-27
Identity = 68/98 (69.39%), Postives = 76/98 (77.55%), Query Frame = 3
Query:    3 PVSTNSVD--EVHAQVEIDGQVYGKGTGITWDEAKMQAAEKALGSLRTTIHGQGIQRRQLSPRPFQGLSNKRLKQEHPRTLQRFASSGRYPRNAPPIP 290
            P+S+NSV   EVHAQVEIDGQV GKG G T+DEAKMQAAEKALGSLRTT  G+   +RQ SPRP  G+ NK LK E PR LQR  SS RYP+NAPP+P
Sbjct:  882 PLSSNSVQNAEVHAQVEIDGQVMGKGIGSTFDEAKMQAAEKALGSLRTTF-GRFPPKRQGSPRPVPGMPNKHLKPEFPRVLQRMPSSARYPKNAPPVP 978          
BLAST of AJ005789 vs. TrEMBL
Match: D7TYW2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_370.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00006447001 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.140e-23
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 3
Query:    3 PVSTNSV--DEVHAQVEIDGQVYGKGTGITWDEAKMQAAEKALGSLRTTIHGQGIQRRQLSPRPFQGLSNKRLKQEHPRTLQRFASSGRYPRNAPPIP 290
            P+S+NS   +E+ AQVEIDGQV GKGTG TWD+AKMQAAEKALGSL++ + GQ  Q+RQ SPR  QG+  KRLK E  R LQR  SSGRY +N  P+P
Sbjct:   65 PLSSNSTQKEEICAQVEIDGQVLGKGTGSTWDDAKMQAAEKALGSLKSML-GQFSQKRQGSPRSLQGM-GKRLKSEFTRGLQRTPSSGRYSKNTSPVP 160          
BLAST of AJ005789 vs. TrEMBL
Match: A5BXH2_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_004100 PE=4 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 4.140e-23
Identity = 62/98 (63.27%), Postives = 74/98 (75.51%), Query Frame = 3
Query:    3 PVSTNSV--DEVHAQVEIDGQVYGKGTGITWDEAKMQAAEKALGSLRTTIHGQGIQRRQLSPRPFQGLSNKRLKQEHPRTLQRFASSGRYPRNAPPIP 290
            P+S+NS   +E+ AQVEIDGQV GKGTG TWD+AKMQAAEKALGSL++ + GQ  Q+RQ SPR  QG+  KRLK E  R LQR  SSGRY +N  P+P
Sbjct:  799 PLSSNSTQKEEICAQVEIDGQVLGKGTGSTWDDAKMQAAEKALGSLKSML-GQFSQKRQGSPRSLQGM-GKRLKSEFTRGLQRTPSSGRYSKNTSPVP 894          
BLAST of AJ005789 vs. TrEMBL
Match: D7MEQ7_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_492708 PE=4 SV=1)

HSP 1 Score: 101.293 bits (251), Expect = 9.544e-20
Identity = 51/81 (62.96%), Postives = 64/81 (79.01%), Query Frame = 3
Query:   24 DEVHAQVEIDGQVYGKGTGITWDEAKMQAAEKALGSLRTTIHGQGIQRRQLSPRPFQGLSNKRLKQEHPRTLQRFASSGRY 266
            DE+ AQVEIDG+V G+G G TWDEA+MQAAE+AL S+R+ + GQ + +RQ SPR F G+SNKRLK +  R+LQR  SSGRY
Sbjct:  885 DELRAQVEIDGRVVGEGVGSTWDEARMQAAERALCSVRSML-GQPVHKRQGSPRSFAGMSNKRLKPDFQRSLQRMPSSGRY 964          
BLAST of AJ005789 vs. TrEMBL
Match: C5XY97_SORBI (Putative uncharacterized protein Sb04g027200 OS=Sorghum bicolor GN=Sb04g027200 PE=4 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.974e-13
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 3
Query:   27 EVHAQVEIDGQVYGKGTGITWDEAKMQAAEKALGSLRTTIHGQGIQRRQLSPRPFQGLSNKRLKQEHPRTLQRFASSGRYPRNAPPIP 290
            E +AQVE+ GQ+ GKG G+TW+EAK+QAA++ALG+LR+ + GQ   +R  SPR      NKR K + PRT+QR    G Y R    +P
Sbjct:  849 ESYAQVEVGGQILGKGVGLTWEEAKLQAADEALGTLRSML-GQLAHKRSGSPRSLAPNFNKRFKPDFPRTVQR-VPYGTYSRIEGHVP 934          
BLAST of AJ005789 vs. TrEMBL
Match: C0PIJ8_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 3.288e-12
Identity = 42/88 (47.73%), Postives = 57/88 (64.77%), Query Frame = 3
Query:   27 EVHAQVEIDGQVYGKGTGITWDEAKMQAAEKALGSLRTTIHGQGIQRRQLSPRPFQGLSNKRLKQEHPRTLQRFASSGRYPRNAPPIP 290
            E +AQV++ GQ+ GKG G+TW+EAK+QAA +ALG+LR+ + GQ   +R  SPR      NKR K + PRT+QR    G Y R    +P
Sbjct:  225 ESYAQVQVGGQILGKGVGLTWEEAKLQAAAEALGTLRSML-GQLGHKRSGSPRSLAPNFNKRFKPDFPRTVQR-VPYGTYSRIEGHVP 310          
BLAST of AJ005789 vs. TrEMBL
Match: B8AFU7_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_08218 PE=4 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 4.294e-12
Identity = 41/88 (46.59%), Postives = 56/88 (63.64%), Query Frame = 3
Query:   27 EVHAQVEIDGQVYGKGTGITWDEAKMQAAEKALGSLRTTIHGQGIQRRQLSPRPFQGLSNKRLKQEHPRTLQRFASSGRYPRNAPPIP 290
            E +A+VE+ GQ+ G G GITW+EAK+QAA++ALG LR+ + G   Q+R  SPR      +KR K + PR +QR    GRY R    +P
Sbjct:  852 EAYAEVEVCGQILGNGVGITWEEAKLQAADEALGMLRSML-GPLAQKRSSSPRSLAPSFDKRFKPDFPRAVQR-VPYGRYSRIEGHVP 937          
BLAST of AJ005789 vs. TrEMBL
Match: C0HEB7_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 5.608e-12
Identity = 42/87 (48.28%), Postives = 58/87 (66.67%), Query Frame = 3
Query:   27 EVHAQVEIDGQVYGKGTGITWDEAKMQAAEKALGSLRTTIHGQGIQRRQLSPRPFQGLSNKRLKQEHPRTLQR--FASSGRYPRNAP 281
            E +AQV+I  Q+ GKG G+TW+EAK+QAA++ALG+LR+ + GQ   RR  SPR      NKR K + PRT+QR  + +  R   +AP
Sbjct:  201 ESYAQVQIGRQILGKGVGLTWEEAKLQAADEALGTLRSML-GQLGHRRSGSPRSLAPNFNKRFKPDFPRTVQRVPYGTYSRIEGHAP 286          
BLAST of AJ005789 vs. TAIR peptide
Match: AT4G21670.1 (| Symbols: CPL1, FRY2, ATCPL1 | C-terminal domain phosphatase-like 1 | chr4:11511511-11516922 FORWARD LENGTH=967)

HSP 1 Score: 104.76 bits (260), Expect = 5.629e-23
Identity = 52/81 (64.20%), Postives = 65/81 (80.25%), Query Frame = 3
Query:   24 DEVHAQVEIDGQVYGKGTGITWDEAKMQAAEKALGSLRTTIHGQGIQRRQLSPRPFQGLSNKRLKQEHPRTLQRFASSGRY 266
            DE+HAQVEIDG+V G+G G TWDEA+MQAAE+AL S+R+ + GQ + +RQ SPR F G+SNKRLK +  R+LQR  SSGRY
Sbjct:  887 DELHAQVEIDGRVVGEGVGSTWDEARMQAAERALSSVRSML-GQPLHKRQGSPRSFGGMSNKRLKPDFQRSLQRMPSSGRY 966          
The following BLAST results are available for this feature:
BLAST of AJ005789 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
CPL1_ARATH5.635e-2264.20RNA polymerase II C-terminal domain phosphatase-li... [more]
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BLAST of AJ005789 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
B9N3C7_POPTR4.567e-3071.43Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9H271_POPTR6.594e-2970.41Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
B9RZ63_RICCO1.244e-2769.39Double-stranded RNA binding protein, putative OS=R... [more]
D7TYW2_VITVI4.140e-2363.27Whole genome shotgun sequence of line PN40024, sca... [more]
A5BXH2_VITVI4.140e-2363.27Putative uncharacterized protein OS=Vitis vinifera... [more]
D7MEQ7_ARALY9.544e-2062.96Putative uncharacterized protein OS=Arabidopsis ly... [more]
C5XY97_SORBI2.974e-1348.86Putative uncharacterized protein Sb04g027200 OS=So... [more]
C0PIJ8_MAIZE3.288e-1247.73Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
B8AFU7_ORYSI4.294e-1246.59Putative uncharacterized protein OS=Oryza sativa s... [more]
C0HEB7_MAIZE5.608e-1248.28Putative uncharacterized protein OS=Zea mays PE=2 ... [more]
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BLAST of AJ005789 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G21670.15.629e-2364.20| Symbols: CPL1, FRY2, ATCPL1 | C-terminal domain ... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001159Double-stranded RNA-bindingPFAMPF00035dsrmcoord: 9..42
score: 4.7
IPR001159Double-stranded RNA-bindingPROFILEPS50137DS_RBDcoord: 13..46
score: 9
IPR014720Double-stranded RNA-binding-likeGENE3D3.30.160.20no descriptioncoord: 8..46
score: 1.4
NoneNo IPR availableSUPERFAMILY54768dsRNA-binding domain-likecoord: 11..64
score: 2.3

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>AJ005789 ID=AJ005789; Name=AJ005789; organism=Cicer arietinum; type=EST; length=770bp
CTCCAGTGTCAACAAATTCAGTAGATGAAGTGCATGCACAGGTCGAGATA
GATGGCCAGGTCTATGGTAAAGGGACTGGAATAACATGGGACGAGGCTAA
AATGCAGGCTGCTGAGAAGGCACTTGGAAGTCTAAGAACAACAATTCACG
GCCAAGGCATTCAGAGAAGGCAGCTTTCTCCCAGGCCATTTCAGGGATTG
TCAAATAAACGTTTGAAGCAAGAACATCCGCGAACTCTGCAACGATTTGC
ATCTTCTGGTAGATATCCCAGGAACGCTCCACCAATTCCTTGACAAGAGC
ATTGGGCTTTTCTTATCTTACTTACCGGTATGACTGTTGGTTGGGGCTGC
ATGTATATGTTACTGATTCTACAATGTGGAGGTGGTGGCTGTCCGGTTGG
ACCATTTCCACTTAATGGGTGAGTGCTTGTCCTCAGTCTTTTTGTCACCG
AGCTCAATGCCAATATAGAACACGACATTTTGTACCAATGTATGATCCTT
CACCGATGTGGGGCAAGACACTGGTCAAAGATTGATTTTGTAAGATGTTC
ACATGTTGGTGATCCCAACTCCCAAGCAATGCAGAATTGGTTGTGTTGTG
TGGATATATGCTTTGAGACCGGTTCACAAGACAAGATGATGAGGCAAGTC
CAATGCAATGCAATGCATACTCAAGAGGAACCAACCCAACCTATTGGAAC
TGAGAATTGATTCAGCGTTTATCTTTCTAACTCAAGTGATGGTACAAGTA
CAGCCATTCAGTACAGGTCC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Molecular Function
TermDefinition
GO:0003725double-stranded RNA binding
GO:0003723RNA binding
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular anatomical structure
Vocabulary: INTERPRO
TermDefinition
IPR001159Double-stranded RNA-binding
IPR014720dsRBD_dom