GR408033

EST Overview


Name	GR408033
Unique Name	GR408033
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	511

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR408033 vs. TrEMBL
Match: B9R824_RICCO (Auxin-induced protein 5NG4, putative OS=Ricinus communis GN=RCOM_1596180 PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.521e-7
Identity = 28/46 (60.87%), Postives = 36/46 (78.26%), Query Frame = -1

Query:  314 KNEEKKFAREQAAIIFSTPEHSIIRSSSHAKTSLNQPFFPSSTENV 451
            K+EEKKFA +++A I S+ +H+ IRS +H KTSL QP  PSSTENV
Sbjct:  339 KSEEKKFAAKESAAIQSSADHASIRSQAHIKTSLTQPLLPSSTENV 384

[Close]

BLAST of GR408033 vs. TrEMBL
Match: A9PD22_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_816039 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.521e-7
Identity = 29/46 (63.04%), Postives = 33/46 (71.74%), Query Frame = -1

Query:  314 KNEEKKFAREQAAIIFSTPEHSIIRSSSHAKTSLNQPFFPSSTENV 451
            K+EEKKF   + A I STPEH I R+ +H KTSL QP  PSSTENV
Sbjct:  339 KSEEKKFLALEKAAIQSTPEHGISRAQTHIKTSLTQPLLPSSTENV 384

The following BLAST results are available for this feature:

BLAST of GR408033 vs. TrEMBL

BLAST of GR408033 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 2


Match Name	E-value	Identity	Description
B9R824_RICCO	1.521e-7	60.87	Auxin-induced protein 5NG4, putative OS=Ricinus co...	[more]
A9PD22_POPTR	1.521e-7	63.04	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 4..11 score
None	No IPR available	SEG	seg	seg	coord: 1..20 score
None	No IPR available	SEG	seg	seg	coord: 1..11 score: NAcoord: 18..23 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR408033 ID=GR408033; Name=GR408033; organism=Cicer arietinum; type=EST; length=511bp
CCTTGTGTAAATCAAACCATTAATTAACATATATAGGCATAGTGGGATTT
CAAGCCTTAAGCCCAAATTTAAGTGACATATATCATTGTAATAATAATTC
CCATAAAAAAAGCCTCATTTCACATATATCCCAATAAAAAAGCATTTGAA
TTAACCAAAAGCAAACCACTTCCCACACACAAAAGCTTCCTAAATAAAGT
AGTAGTAATGTATAACTACTATCATGCTTCTTTGATGTCCATTTTTTTTC
TTTCTCTTTTCAAAAAAAATATTGATTTTTGCAGCTTGAAGTTATTTATG
ATTTTCTTGATTAAACATTTTCCGTTGATGAAGGAAAAAAAGGTTGATTA
AGTGATGTTTTGGCATGGCTTGAGGATCTGATGATGCTATGCTCTGGAGT
GGAAAAAATAATTGCTGCCTGCTCCCTTGCAAATTTCTTTTCTTCATTTT
TACCCCACAACACTAGGTACAACCCCACAATGATCAATACTGCTCCAATG
ATCCCTCCCAA

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