HO063005

EST Overview
NameHO063005
Unique NameHO063005
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length300
Libraries
Library NameType
LIBEST_026409 Chickpea drought stressed cDNA SSH library AB2cdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide2011-02-03
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
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BLAST of HO063005 vs. TAIR peptide
Match: AT5G54940.2 (| Symbols: | Translation initiation factor SUI1 family protein | chr5:22308420-22308758 REVERSE LENGTH=112)

HSP 1 Score: 54.6842 bits (130), Expect = 1.387e-8
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = -2 
Query:   60 RGREKRLDSSSGGKKEFSWGRFSK-ISERVLCTGNFFREKELGKIIQLQGGSGVRTFSQFLFQVGPGEERARIKIQGF 290
            R  +K L +  G KKE+S+ R  K + +   C GN  ++KELGKIIQLQG    +  SQFL Q G   ++ +IKI GF
Sbjct:   37 RNGKKSLTTVQGLKKEYSYERILKDLKKDFCCNGNVVQDKELGKIIQLQGDQR-KKVSQFLVQTGIA-KKDQIKIHGF 112
[Close]
BLAST of HO063005 vs. TAIR peptide
Match: AT5G54940.1 (| Symbols: | Translation initiation factor SUI1 family protein | chr5:22308420-22308758 REVERSE LENGTH=112)

HSP 1 Score: 54.6842 bits (130), Expect = 1.387e-8
Identity = 35/78 (44.87%), Postives = 47/78 (60.26%), Query Frame = -2 
Query:   60 RGREKRLDSSSGGKKEFSWGRFSK-ISERVLCTGNFFREKELGKIIQLQGGSGVRTFSQFLFQVGPGEERARIKIQGF 290
            R  +K L +  G KKE+S+ R  K + +   C GN  ++KELGKIIQLQG    +  SQFL Q G   ++ +IKI GF
Sbjct:   37 RNGKKSLTTVQGLKKEYSYERILKDLKKDFCCNGNVVQDKELGKIIQLQGDQR-KKVSQFLVQTGIA-KKDQIKIHGF 112
The following BLAST results are available for this feature:
BLAST of HO063005 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2
Match NameE-valueIdentityDescription
AT5G54940.21.387e-844.87| Symbols: | Translation initiation factor SUI1 f... [more]
AT5G54940.11.387e-844.87| Symbols: | Translation initiation factor SUI1 f... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableGENE3D3.30.780.10no descriptioncoord: 27..80
score: 0.0

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>HO063005 ID=HO063005; Name=HO063005; organism=Cicer arietinum; type=EST; length=300bp
GGGCCCCCCCCCCTTTAGCAAATAAATCCCCGGCTTCTATAAAAAAACAA
GTTTCTTTAAAAACCCTGAATCTTAATCCGGGCCCTTTCCTCCCCAGGGC
CCACCTGAAACAAAAACTGAGAAAACGTTCTTACCCCTGATCCCCCTTGG
AGTTGAATTATTTTACCCAGCTCTTTTTCCCGGAAAAAATTTCCCGTGCA
CAAAACTCTTTCTGAAATTTTTGAAAATCTTCCCCAACTGAACTCCTTCT
TCCCCCCTGAACTGGAATCCAATCTTTTTTCCCTTCCTCTGGTGAATCCG
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