GR406632

EST Overview


Name	GR406632
Unique Name	GR406632
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	324

Libraries


Library Name	Type
LIBEST_024786 JG11 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR406632 vs. SwissProt
Match: EXBA_DROME (Protein extra bases OS=Drosophila melanogaster GN=exba PE=1 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 6.093e-8
Identity = 36/107 (33.64%), Postives = 56/107 (52.34%), Query Frame = 3

Query:    3 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKEYLIDNSLDDLIAILKRGKIEDNLLVFFPPAK 323
            R  +L K  E  M + L  ++ F  +ER KLA  TAL     ++G  P  V   L  ++L+  G+ L F+ + F+ +  +  +  LI  LK+G +E  L+ FFPP K
Sbjct:  121 RYKYLEKMFEEEMGKVLLFVKGFTPSERIKLARMTALWL---VNGSVPPNVLLVLNNEHLIKDGIALEFLLELFQTFKQEKGIAYLIQALKKGGLESKLMDFFPPNK 224

[Close]

BLAST of GR406632 vs. TrEMBL
Match: B9RM70_RICCO (Translation initiation factor, putative OS=Ricinus communis GN=RCOM_1078400 PE=4 SV=1)

HSP 1 Score: 199.134 bits (505), Expect = 1.159e-49
Identity = 100/107 (93.46%), Postives = 104/107 (97.20%), Query Frame = 3

Query:    3 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKEYLIDNSLDDLIAILKRGKIEDNLLVFFPPAK 323
            RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLV KGLVLTFITDFFKEYL+DNSLDDLI+ILKRGK+E+NLL FFP AK
Sbjct:  116 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVGKGLVLTFITDFFKEYLVDNSLDDLISILKRGKVEENLLDFFPSAK 222

[Close]

BLAST of GR406632 vs. TrEMBL
Match: D7SPN8_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_23.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00019078001 PE=4 SV=1)

HSP 1 Score: 197.593 bits (501), Expect = 3.372e-49
Identity = 98/107 (91.59%), Postives = 104/107 (97.20%), Query Frame = 3

Query:    3 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKEYLIDNSLDDLIAILKRGKIEDNLLVFFPPAK 323
            RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTAL FSQKLSGLPPETV QPLLKDNLVAKGLVL+FITDFFKEYL+DNSLDDLI++LKRGK+EDNLL+FFP AK
Sbjct:  134 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALTFSQKLSGLPPETVLQPLLKDNLVAKGLVLSFITDFFKEYLVDNSLDDLISLLKRGKMEDNLLIFFPSAK 240

[Close]

BLAST of GR406632 vs. TrEMBL
Match: A9P9K5_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_814507 PE=2 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 1.281e-48
Identity = 97/107 (90.65%), Postives = 105/107 (98.13%), Query Frame = 3

Query:    3 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKEYLIDNSLDDLIAILKRGKIEDNLLVFFPPAK 323
            R+PFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKG+VL+FITDFFKEYL+DNSLDDLI+ILKRGK+E+NL+ FFP AK
Sbjct:  116 RKPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGIVLSFITDFFKEYLVDNSLDDLISILKRGKMEENLMDFFPSAK 222

[Close]

BLAST of GR406632 vs. TrEMBL
Match: C6TGK9_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 194.512 bits (493), Expect = 2.855e-48
Identity = 97/107 (90.65%), Postives = 104/107 (97.20%), Query Frame = 3

Query:    3 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKEYLIDNSLDDLIAILKRGKIEDNLLVFFPPAK 323
            RRPFLIKNLENVMR+FLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVL+F+TDFFKEYLIDNSLDDLI+ILKRGK+E++LL  FPP K
Sbjct:  116 RRPFLIKNLENVMRKFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLSFMTDFFKEYLIDNSLDDLISILKRGKVEEDLLDIFPPTK 222

[Close]

BLAST of GR406632 vs. TrEMBL
Match: A9PDX0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_814617 PE=2 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 3.729e-48
Identity = 97/107 (90.65%), Postives = 104/107 (97.20%), Query Frame = 3

Query:    3 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKEYLIDNSLDDLIAILKRGKIEDNLLVFFPPAK 323
            RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLV+KG+VL+FITDFFK YL+DNSLDDLI+ILKRGK+E+NLL FFP AK
Sbjct:  116 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVSKGIVLSFITDFFKVYLVDNSLDDLISILKRGKMEENLLEFFPSAK 222

[Close]

BLAST of GR406632 vs. TrEMBL
Match: C6JRY9_SORBI (Putative uncharacterized protein Sb0014s003010 OS=Sorghum bicolor GN=Sb0014s003010 PE=4 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.384e-47
Identity = 95/107 (88.79%), Postives = 103/107 (96.26%), Query Frame = 3

Query:    3 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKEYLIDNSLDDLIAILKRGKIEDNLLVFFPPAK 323
            RRPFLIKNLENVMR+FLQSLE FEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKG+VL+FIT+FFKEYL +NSLDDLIA+LK+GK+EDNLL FFP AK
Sbjct:  177 RRPFLIKNLENVMRKFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGIVLSFITEFFKEYLKENSLDDLIALLKKGKMEDNLLDFFPSAK 283

[Close]

BLAST of GR406632 vs. TrEMBL
Match: B4FI21_MAIZE (Eukaryotic initiation factor 5C CG2922-PF, isoform F OS=Zea mays PE=2 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 5.384e-47
Identity = 95/107 (88.79%), Postives = 103/107 (96.26%), Query Frame = 3

Query:    3 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKEYLIDNSLDDLIAILKRGKIEDNLLVFFPPAK 323
            RRPFLIKNLENVMR+FLQSLE FEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKG+VL+FIT+FFKEYL +NSLDDLIA+LK+GK+EDNLL FFP AK
Sbjct:  116 RRPFLIKNLENVMRKFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGIVLSFITEFFKEYLEENSLDDLIALLKKGKMEDNLLDFFPSAK 222

[Close]

BLAST of GR406632 vs. TrEMBL
Match: D5AED4_PICSI (Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 9.184e-47
Identity = 94/107 (87.85%), Postives = 102/107 (95.33%), Query Frame = 3

Query:    3 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKEYLIDNSLDDLIAILKRGKIEDNLLVFFPPAK 323
            RRPFLIKNLENVMRRFLQSLELFE+NERKKLAIFT+L FSQKLSGLPPETVFQPLLKDNLV+KG+VL+FITDFFKEYL+DN+LDDLIA+LKRGKIEDNLL  FP  K
Sbjct:  116 RRPFLIKNLENVMRRFLQSLELFEDNERKKLAIFTSLTFSQKLSGLPPETVFQPLLKDNLVSKGIVLSFITDFFKEYLVDNTLDDLIALLKRGKIEDNLLDLFPIQK 222

[Close]

BLAST of GR406632 vs. TrEMBL
Match: C0PP47_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.199e-46
Identity = 94/107 (87.85%), Postives = 103/107 (96.26%), Query Frame = 3

Query:    3 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKEYLIDNSLDDLIAILKRGKIEDNLLVFFPPAK 323
            RRPFLIKNLENVMR+FLQSLE FEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKG+VL+FIT+FFKEYL +N+LDDLIA+LK+GK+EDNLL FFP AK
Sbjct:  116 RRPFLIKNLENVMRKFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGIVLSFITEFFKEYLKENTLDDLIALLKKGKMEDNLLDFFPSAK 222

[Close]

BLAST of GR406632 vs. TrEMBL
Match: B6TRV8_MAIZE (Eukaryotic initiation factor 5C CG2922-PF, isoform F OS=Zea mays PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 1.199e-46
Identity = 94/107 (87.85%), Postives = 103/107 (96.26%), Query Frame = 3

Query:    3 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKEYLIDNSLDDLIAILKRGKIEDNLLVFFPPAK 323
            RRPFLIKNLENVMR+FLQSLE FEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKG+VL+FIT+FFKEYL +N+LDDLIA+LK+GK+EDNLL FFP AK
Sbjct:  116 RRPFLIKNLENVMRKFLQSLEFFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGIVLSFITEFFKEYLKENTLDDLIALLKKGKMEDNLLDFFPSAK 222

[Close]

BLAST of GR406632 vs. TAIR peptide
Match: AT5G36230.1 (| Symbols: | ARM repeat superfamily protein | chr5:14273519-14276773 FORWARD LENGTH=411)

HSP 1 Score: 188.348 bits (477), Expect = 8.133e-49
Identity = 91/107 (85.05%), Postives = 103/107 (96.26%), Query Frame = 3

Query:    3 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKEYLIDNSLDDLIAILKRGKIEDNLLVFFPPAK 323
            R+PFLIKNLENV RRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKG+VL+F+TDFFKEYL++NSL+DLI+IL+RGK+EDNL+ F PP +
Sbjct:  116 RKPFLIKNLENVTRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGIVLSFVTDFFKEYLVENSLEDLISILRRGKMEDNLMDFLPPVR 222

[Close]

BLAST of GR406632 vs. TAIR peptide
Match: AT1G65220.1 (| Symbols: | ARM repeat superfamily protein | chr1:24226204-24228799 FORWARD LENGTH=411)

HSP 1 Score: 177.948 bits (450), Expect = 1.099e-45
Identity = 88/107 (82.24%), Postives = 97/107 (90.65%), Query Frame = 3

Query:    3 RRPFLIKNLENVMRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPPETVFQPLLKDNLVAKGLVLTFITDFFKEYLIDNSLDDLIAILKRGKIEDNLLVFFPPAK 323
            R+ FLIKNLENV RRFLQSLELFEENERKKLAIFTALAFSQKLSGLP ETVFQPLLKD LVAKG+VL F+TDFF EYL++NSLDDLI+IL+RGK++D LL F PP K
Sbjct:  116 RKAFLIKNLENVTRRFLQSLELFEENERKKLAIFTALAFSQKLSGLPAETVFQPLLKDTLVAKGIVLNFVTDFFNEYLVENSLDDLISILRRGKMDDKLLEFLPPTK 222

The following BLAST results are available for this feature:

BLAST of GR406632 vs. SwissProt
BLAST of GR406632 vs. TrEMBL
BLAST of GR406632 vs. TAIR peptide

BLAST of GR406632 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
EXBA_DROME	6.093e-8	33.64	Protein extra bases OS=Drosophila melanogaster GN=...	[more]

BLAST of GR406632 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9RM70_RICCO	1.159e-49	93.46	Translation initiation factor, putative OS=Ricinus...	[more]
D7SPN8_VITVI	3.372e-49	91.59	Whole genome shotgun sequence of line PN40024, sca...	[more]
A9P9K5_POPTR	1.281e-48	90.65	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
C6TGK9_SOYBN	2.855e-48	90.65	Putative uncharacterized protein OS=Glycine max PE...	[more]
A9PDX0_POPTR	3.729e-48	90.65	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
C6JRY9_SORBI	5.384e-47	88.79	Putative uncharacterized protein Sb0014s003010 OS=...	[more]
B4FI21_MAIZE	5.384e-47	88.79	Eukaryotic initiation factor 5C CG2922-PF, isoform...	[more]
D5AED4_PICSI	9.184e-47	87.85	Putative uncharacterized protein OS=Picea sitchens...	[more]
C0PP47_MAIZE	1.199e-46	87.85	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
B6TRV8_MAIZE	1.199e-46	87.85	Eukaryotic initiation factor 5C CG2922-PF, isoform...	[more]

BLAST of GR406632 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT5G36230.1	8.133e-49	85.05	\| Symbols: \| ARM repeat superfamily protein \| chr...	[more]
AT1G65220.1	1.099e-45	82.24	\| Symbols: \| ARM repeat superfamily protein \| chr...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR14208	HFB2 PROTEIN	coord: 1..107 score: 1.9
None	No IPR available	SEG	seg	seg	coord: 78..88 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR406632 ID=GR406632; Name=GR406632; organism=Cicer arietinum; type=EST; length=324bp
GTAGAAGGCCCTTCCTCATCAAGAACCTTGAAAATGTCATGCGAAGATTC
TTACAGTCCTTGGAGCTTTTCGAGGAAAATGAGAGGAAAAAGTTGGCAAT
CTTCACAGCTCTTGCTTTCTCCCAGAAGCTTTCTGGTCTCCCACCGGAGA
CTGTGTTCCAACCACTTCTTAAAGATAACCTTGTGGCCAAAGGGCTAGTT
CTGACGTTTATAACTGACTTCTTTAAGGAGTATTTGATTGACAATAGTCT
TGATGATCTGATTGCAATTCTGAAACGGGGAAAAATAGAGGATAATCTTT
TGGTCTTTTTCCCCCCTGCAAAAA

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