GR407949
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR407949 vs. SwissProt
Match: U139_ARATH (UPF0139 membrane protein At5g07960 OS=Arabidopsis thaliana GN=At5g07960 PE=2 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 6.868e-39 Identity = 74/104 (71.15%), Postives = 88/104 (84.62%), Query Frame = -2 Query: 192 SHGN-----DPRQPSAGKPYVAPVIAPQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRPGGKQ 488 SHGN DPRQPSA KPY+ +AP+DLP+DY+GFIAVI GV+GVMFRYK+ SWLA+IFCAQS+ANMRN+ENDLKQ+ MAMMF+IMGL+TNY GP RP K+ Sbjct: 4 SHGNASSVNDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQSLANMRNLENDLKQISMAMMFAIMGLVTNYLGPNRPATKK 107
BLAST of GR407949 vs. SwissProt
Match: U139_MANSE (UPF0139 membrane protein pMsmaA27 OS=Manduca sexta PE=3 SV=1) HSP 1 Score: 57.7658 bits (138), Expect = 3.676e-8 Identity = 32/95 (33.68%), Postives = 51/95 (53.68%), Query Frame = -2 Query: 204 NDPRQPSAGKPYVAP--VIAP-QDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRP 479 +DPR+ + Y P AP +DL DY + ++F + G+M R K +W A+ + S AN R V +D KQ++ + M SI ++ +Y P P Sbjct: 5 SDPRRADRERRYKPPPSTTAPAEDLTTDYMNILGMVFSMCGLMMRLKWCAWTAVFCSSISFANSR-VSDDTKQIVSSFMLSISAVVMSYLQNPSP 98
BLAST of GR407949 vs. SwissProt
Match: U139_DICDI (UPF0139 membrane protein OS=Dictyostelium discoideum GN=DDB_G0275849 PE=3 SV=1) HSP 1 Score: 57.3806 bits (137), Expect = 4.801e-8 Identity = 19/71 (26.76%), Postives = 45/71 (63.38%), Query Frame = -2 Query: 213 PQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGP 425 P++ ++ ++IFG G+M +YK+ W++ + C ++N+++ ++ ++ ++ + S+MGL+ YFGP Sbjct: 22 PKEGELELYSLFSIIFGFLGIMLKYKICLWVSAVCCVAYLSNLKSKDSSVRTILSPVSLSLMGLVMAYFGP 92
BLAST of GR407949 vs. SwissProt
Match: CS056_MOUSE (UPF0139 membrane protein C19orf56 homolog OS=Mus musculus PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 6.932e-7 Identity = 32/96 (33.33%), Postives = 50/96 (52.08%), Query Frame = -2 Query: 204 NDPRQPSAGKPYVAPVI----APQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRP 479 +DPR+P+ Y P A D DY + +IF + G+M + K +W+A+ S AN R+ E D KQ+M + M SI ++ +Y P+P Sbjct: 7 SDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAVYCSFISFANSRSSE-DTKQMMSSFMLSISAVVMSYLQNPQP 101
BLAST of GR407949 vs. SwissProt
Match: CS056_HUMAN (UPF0139 membrane protein C19orf56 OS=Homo sapiens GN=C19orf56 PE=2 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 6.932e-7 Identity = 32/96 (33.33%), Postives = 50/96 (52.08%), Query Frame = -2 Query: 204 NDPRQPSAGKPYVAPVI----APQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRP 479 +DPR+P+ Y P A D DY + +IF + G+M + K +W+A+ S AN R+ E D KQ+M + M SI ++ +Y P+P Sbjct: 7 SDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAVYCSFISFANSRSSE-DTKQMMSSFMLSISAVVMSYLQNPQP 101
BLAST of GR407949 vs. SwissProt
Match: CS056_BOVIN (UPF0139 membrane protein C19orf56 homolog OS=Bos taurus PE=3 SV=1) HSP 1 Score: 53.5286 bits (127), Expect = 6.932e-7 Identity = 32/96 (33.33%), Postives = 50/96 (52.08%), Query Frame = -2 Query: 204 NDPRQPSAGKPYVAPVI----APQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRP 479 +DPR+P+ Y P A D DY + +IF + G+M + K +W+A+ S AN R+ E D KQ+M + M SI ++ +Y P+P Sbjct: 7 SDPRRPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAVYCSFISFANSRSSE-DTKQMMSSFMLSISAVVMSYLQNPQP 101
BLAST of GR407949 vs. SwissProt
Match: CS056_PIG (UPF0139 membrane protein C19orf56 homolog OS=Sus scrofa PE=3 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 9.054e-7 Identity = 32/96 (33.33%), Postives = 49/96 (51.04%), Query Frame = -2 Query: 204 NDPRQPSAGKPYVAPVI----APQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRP 479 +DPR P+ Y P A D DY + +IF + G+M + K +W+A+ S AN R+ E D KQ+M + M SI ++ +Y P+P Sbjct: 7 SDPRSPNKVLRYKPPPSECNPALDDPTPDYMNLLGMIFSMCGLMLKLKWCAWVAVYCSFISFANSRSSE-DTKQMMSSFMLSISAVVMSYLQNPQP 101
BLAST of GR407949 vs. TrEMBL
Match: C6T148_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 189.504 bits (480), Expect = 1.042e-46 Identity = 93/102 (91.18%), Postives = 98/102 (96.08%), Query Frame = -2 Query: 189 MSSHGNDPRQPSAGKPYVAPVIAPQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRPGGKQS 494 MSS+ NDPRQPSA +PYVAP I+PQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQS+ANMRNVENDLKQVMMAMMFS+MGLITNYFGPPRP GKQS Sbjct: 1 MSSNPNDPRQPSAARPYVAPQISPQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSVANMRNVENDLKQVMMAMMFSLMGLITNYFGPPRP-GKQS 101
BLAST of GR407949 vs. TrEMBL
Match: B9N068_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_827418 PE=4 SV=1) HSP 1 Score: 164.466 bits (415), Expect = 3.590e-39 Identity = 74/99 (74.75%), Postives = 88/99 (88.89%), Query Frame = -2 Query: 195 SSHGNDPRQPSAGKPYVAPVIAPQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRPGGK 491 S+ NDPRQP A KP+VAP+++PQDLP+DY+GFIAVI GVAGVMFRYKL SWLALIFCAQS++NMRN+ENDLKQ+ MA MF+IMGL+TNY GP RPG + Sbjct: 8 SASANDPRQPLAAKPFVAPMVSPQDLPVDYSGFIAVILGVAGVMFRYKLCSWLALIFCAQSLSNMRNMENDLKQISMASMFAIMGLVTNYLGPARPGSQ 106
BLAST of GR407949 vs. TrEMBL
Match: C5X079_SORBI (Putative uncharacterized protein Sb01g007650 OS=Sorghum bicolor GN=Sb01g007650 PE=4 SV=1) HSP 1 Score: 160.229 bits (404), Expect = 6.771e-38 Identity = 69/94 (73.40%), Postives = 83/94 (88.30%), Query Frame = -2 Query: 201 GNDPRQPSAGKPYVAPVIAPQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRPG 482 G+DPRQPS KPY P ++PQDLPIDYAGF+AV+FGV GVM RYK+ SW+A+IFCAQS+ANM+N ENDLKQ+ MA MF++MGL+TNYFGPPRPG Sbjct: 15 GSDPRQPSTAKPYAPPKLSPQDLPIDYAGFLAVVFGVVGVMLRYKVCSWIAIIFCAQSLANMKNFENDLKQLSMAFMFAVMGLVTNYFGPPRPG 108
BLAST of GR407949 vs. TrEMBL
Match: Q0WU11_ARATH (Putative uncharacterized protein At5g07960 OS=Arabidopsis thaliana GN=At5g07960 PE=4 SV=1) HSP 1 Score: 159.844 bits (403), Expect = 8.843e-38 Identity = 74/104 (71.15%), Postives = 88/104 (84.62%), Query Frame = -2 Query: 192 SHGN-----DPRQPSAGKPYVAPVIAPQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRPGGKQ 488 SHGN DPRQPSA KPY+ +AP+DLP+DY+GFIAVI GV+GVMFRYK+ SWLA+IFCAQS+ANMRN+ENDLKQ+ MAMMF+IMGL+TNY GP RP K+ Sbjct: 4 SHGNASSVNDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQSLANMRNLENDLKQISMAMMFAIMGLVTNYLGPNRPATKK 107
BLAST of GR407949 vs. TrEMBL
Match: A9PD61_POPTR (Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.970e-37 Identity = 73/106 (68.87%), Postives = 89/106 (83.96%), Query Frame = -2 Query: 195 MSSHG------NDPRQPSAGKPYVAPVIAPQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRPGGK 494 MSSH NDPRQPSA K ++AP+++PQD+P+DY+GF+AVI GVAGVMFRYKL SWLALIFCAQS++NMRN+ENDLKQ+ MA MF+IMGL+TNY GP RP + Sbjct: 1 MSSHNYNPASANDPRQPSASKSFLAPMVSPQDVPVDYSGFVAVILGVAGVMFRYKLCSWLALIFCAQSLSNMRNMENDLKQISMASMFAIMGLVTNYLGPARPASQ 106
BLAST of GR407949 vs. TrEMBL
Match: A9PB71_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_569929 PE=4 SV=1) HSP 1 Score: 158.688 bits (400), Expect = 1.970e-37 Identity = 73/106 (68.87%), Postives = 89/106 (83.96%), Query Frame = -2 Query: 195 MSSHGN------DPRQPSAGKPYVAPVIAPQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRPGGK 494 MSSH N DPRQPSA K ++AP+++PQD+P+DY+GF+AVI GVAGVMFRYKL SWLALIFCAQS++NMRN+ENDLKQ+ MA MF+IMGL+TNY GP RP + Sbjct: 1 MSSHNNNPASANDPRQPSASKSFLAPMVSPQDVPVDYSGFVAVILGVAGVMFRYKLCSWLALIFCAQSLSNMRNMENDLKQISMASMFAIMGLVTNYLGPARPASQ 106
BLAST of GR407949 vs. TrEMBL
Match: D7M0P0_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_487629 PE=4 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 7.486e-37 Identity = 71/100 (71.00%), Postives = 85/100 (85.00%), Query Frame = -2 Query: 192 SSHGNDPRQPSAGKPYVAPVIAPQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRPGGKQ 491 +S NDPR PSA KPY +AP+DLP+DY+GFIAVI GV+GVMFRYK+ SWLA+IFCAQS+ANMRN+ENDLKQ+ MAMMF+IMGL+TNY GP RP K+ Sbjct: 8 ASSANDPRLPSAAKPYTPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQSLANMRNLENDLKQISMAMMFAIMGLVTNYLGPNRPATKK 107
BLAST of GR407949 vs. TrEMBL
Match: B6SYH6_MAIZE (PTD008 protein OS=Zea mays PE=4 SV=1) HSP 1 Score: 156.762 bits (395), Expect = 7.486e-37 Identity = 68/94 (72.34%), Postives = 82/94 (87.23%), Query Frame = -2 Query: 201 GNDPRQPSAGKPYVAPVIAPQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRPG 482 G+DPRQPS KPY P ++PQDLPIDYAGF+AV+FGV GVM RYK+ SW+A+IFCAQS+ANM+N ENDLKQ+ MA MF++MGL+TNYFGP RPG Sbjct: 15 GSDPRQPSTAKPYAPPKLSPQDLPIDYAGFLAVVFGVLGVMLRYKVCSWIAIIFCAQSLANMKNFENDLKQLSMAFMFAVMGLVTNYFGPARPG 108
BLAST of GR407949 vs. TrEMBL
Match: B6SJC6_MAIZE (PTD008 protein OS=Zea mays PE=4 SV=1) HSP 1 Score: 155.221 bits (391), Expect = 2.178e-36 Identity = 68/94 (72.34%), Postives = 81/94 (86.17%), Query Frame = -2 Query: 201 GNDPRQPSAGKPYVAPVIAPQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRPG 482 G+DPRQPS KPY P ++PQDLPIDYAGF+AV FGV GVM RYK+ SW+A+IFCAQS+ANM+N ENDLKQ+ MA MF++MGL+TNYFGP RPG Sbjct: 15 GSDPRQPSTAKPYAPPKLSPQDLPIDYAGFLAVAFGVLGVMLRYKVCSWIAIIFCAQSLANMKNFENDLKQLSMAFMFAVMGLVTNYFGPARPG 108
BLAST of GR407949 vs. TrEMBL
Match: Q10CL8_ORYSJ (Os03g0756800 protein OS=Oryza sativa subsp. japonica GN=Os03g0756800 PE=4 SV=1) HSP 1 Score: 152.91 bits (385), Expect = 1.081e-35 Identity = 66/96 (68.75%), Postives = 81/96 (84.38%), Query Frame = -2 Query: 192 NDPRQPSAGKPYVAPVIAPQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRPGGKQ 479 NDPRQPS + Y P ++PQDLPIDYAGF+AV+FGV GVM RYK+ SW+A+IFCAQS+ NM+N ENDLKQ+ MA MF++MGL+TNY GPPRPG K+ Sbjct: 18 NDPRQPSTARQYTPPKLSPQDLPIDYAGFLAVVFGVLGVMLRYKVCSWIAIIFCAQSLVNMKNFENDLKQLSMAFMFAVMGLVTNYLGPPRPGTKR 113
BLAST of GR407949 vs. TAIR peptide
Match: AT5G07960.1 (| Symbols: | unknown protein; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0139 (InterPro:IPR005351); Has 193 Blast hits to 193 proteins in 75 species: Archae - 0; Bacteria - 0; Metazoa - 130; Fungi - 0; Plants - 52; Viruses - 0; Other Eukaryotes - 11 (source: NCBI BLink). | chr5:2542350-2543253 FORWARD LENGTH=107) HSP 1 Score: 159.844 bits (403), Expect = 7.586e-40 Identity = 74/104 (71.15%), Postives = 88/104 (84.62%), Query Frame = -2 Query: 192 SHGN-----DPRQPSAGKPYVAPVIAPQDLPIDYAGFIAVIFGVAGVMFRYKLSSWLALIFCAQSIANMRNVENDLKQVMMAMMFSIMGLITNYFGPPRPGGKQ 488 SHGN DPRQPSA KPY+ +AP+DLP+DY+GFIAVI GV+GVMFRYK+ SWLA+IFCAQS+ANMRN+ENDLKQ+ MAMMF+IMGL+TNY GP RP K+ Sbjct: 4 SHGNASSVNDPRQPSAAKPYIPRPVAPEDLPVDYSGFIAVILGVSGVMFRYKICSWLAIIFCAQSLANMRNLENDLKQISMAMMFAIMGLVTNYLGPNRPATKK 107 The following BLAST results are available for this feature:
BLAST of GR407949 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot) Total hits: 7
BLAST of GR407949 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
BLAST of GR407949 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR407949 ID=GR407949; Name=GR407949; organism=Cicer arietinum; type=EST; length=522bpback to top Annotated Terms
The
following terms have been associated with
this EST:
|