GR420928

EST Overview


Name	GR420928
Unique Name	GR420928
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	704

Libraries


Library Name	Type
LIBEST_024785 ICCV2 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

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BLAST of GR420928 vs. TrEMBL
Match: D7TNR7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_26.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00020233001 PE=4 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.962e-12
Identity = 44/120 (36.67%), Postives = 67/120 (55.83%), Query Frame = -1

Query:  336 FKEKSGEVCTENSKEKETQAAGGVEKDEEVAKPSDVNEDAKPDLEHSKKEDSDSGNKKSHASLCGGIVTDEDRDALRKSIDMIEKRSRERLKTRXXXXXXLVLCAANW*NSTSEQPTKTR 695
            + E+  E  TENSK+ +     G EK++E     + NE  KP LE SKK+ ++  NK++  +   GIVTDEDR+A R++++ +     ER+KT+          A    N+ SE PTK+R
Sbjct:  189 YLERYVEKKTENSKKPQESDIEGSEKEQESVPGVEQNEILKPSLEDSKKDGNELVNKENQDNASFGIVTDEDREADREALEKLTSMMEERIKTKPLPPPPAQGAADGSENTNSELPTKSR 308

The following BLAST results are available for this feature:

BLAST of GR420928 vs. TrEMBL

BLAST of GR420928 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 1


Match Name	E-value	Identity	Description
D7TNR7_VITVI	7.962e-12	36.67	Whole genome shotgun sequence of line PN40024, sca...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 25..61 score: NAcoord: 156..169 score: NAcoord: 182..194 score
None	No IPR available	SEG	seg	seg	coord: 10..28 score: NAcoord: 38..62 score: NAcoord: 87..99 score
None	No IPR available	SEG	seg	seg	coord: 28..55 score
None	No IPR available	SEG	seg	seg	coord: 44..64 score
None	No IPR available	SEG	seg	seg	coord: 15..31 score
None	No IPR available	SEG	seg	seg	coord: 97..103 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR420928 ID=GR420928; Name=GR420928; organism=Cicer arietinum; type=EST; length=704bp
CTCTTTCTCTTACTGACCTCTATGTTCTTTCTTTATCAAATATACTTCAA
ACTCTAATCCTTCGTCCCATTCAACCTCTTCTCCCTGTTTTACGCCCTCT
CAGCTGTTCCCTCTCCTTCCGAATACAAGTTCTCCGTTTCTCTTTCATAT
CTCTCCCTTTCTTTCCTTTTCTCTTTTCAGTTGTTTTTCCTGTCATGCCT
TCGATCTCTCTCCCTTCTGTCAGGGGTTTCAGGTCTATCATGTATCACTG
TTTGTCTTTCAGTGGTTGGTTTGTTCTTCAACTCTCTCATTTTTACTATT
TCATTCTTCTTTGAGAATCCCCTTTATCCACGTCCTCTTGTTTTAGTCGG
TTGTTCGGAAGTTGAATTTCACCAGTTGGCGGCGCACAGAACCAGAGGTG
GTGGAGGCAAAGGTCTTGTCTTCAACCTCTCTCTTGATCTTTTCTCAATC
ATATCGATCGATTTCCTTAAAGCATCTCTATCTTCATCAGTAACAATCCC
ACCACATAAACTTGCGTGGGATTTCTTGTTCCCCGAATCACTGTCCTCCT
TTTTTGAGTGCTCCAGATCAGGCTTTGCATCCTCATTTACATCAGAAGGT
TTTGCAACTTCTTCATCTTTTTCAACTCCTCCTGCTGCCTGAGTTTCCTT
TTCCTTTGAATTCTCAGTACATACTTCTCCAGATTTTTCTTTGAAGTTTT
CTCA

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