GR393188

EST Overview


Name	GR393188
Unique Name	GR393188
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	303

Libraries


Library Name	Type
LIBEST_024778 ICC1882 field drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR393188 vs. TrEMBL
Match: B9R7Z4_RICCO (Ubiquitin-protein ligase, putative OS=Ricinus communis GN=RCOM_1595670 PE=4 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.284e-7
Identity = 24/29 (82.76%), Postives = 27/29 (93.10%), Query Frame = 3

Query:   87 HFSLGSKWNQSLSENDSARKKGFWARYRK 173
            HF  GSKW++SLSENDSARK+GFWARYRK
Sbjct:  410 HFPFGSKWSRSLSENDSARKRGFWARYRK 438

The following BLAST results are available for this feature:

BLAST of GR393188 vs. TrEMBL

BLAST of GR393188 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 1


Match Name	E-value	Identity	Description
B9R7Z4_RICCO	3.284e-7	82.76	Ubiquitin-protein ligase, putative OS=Ricinus comm...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 9..28 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR393188 ID=GR393188; Name=GR393188; organism=Cicer arietinum; type=EST; length=303bp
TTTTTGATCGCCAAAAAAATGTAGTTTCAAAATTGGAGCCTAGCTCCAGT
TCTAGGAGTTCATACAGAAAACCCTTATTGAGGCGGCATTTTTCACTTGG
ATCCAAGTGGAATCAATCCCTGTCTGAGAATGATTCTGCCAGGAAGAAAG
GTTTTTGGGCGAGGTATCGTAAAGATTGAGCTTCCTTAGCCATAGCTGTT
AGTTGCAGAAGCTCTCTAATTATACTTGTAGCACCAGCAACTTAGGATTT
AAAATTTGTACGCTGACTAGCTTTACTAATAATTCTAGATTTATTTTCAT
TTT

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