GR393232

EST Overview


Name	GR393232
Unique Name	GR393232
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	527

Libraries


Library Name	Type
LIBEST_024778 ICC1882 field drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR393232 vs. SwissProt
Match: AGL12_ARATH (Agamous-like MADS-box protein AGL12 OS=Arabidopsis thaliana GN=AGL12 PE=2 SV=2)

HSP 1 Score: 109.383 bits (272), Expect = 1.098e-23
Identity = 56/114 (49.12%), Postives = 75/114 (65.79%), Query Frame = -3

Query:  193 DAKEETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSV---TNFVPFATDTLYPLIIQDGIFQ 525
            D K+E +VLKQEIE LQKGI Y+ GGG G + ++EL +LEK+ E W+  +R  KM++MLQEIQ+ R+KEG LK  NKY  + + EN +     NF    T+  YPL +   IFQ
Sbjct:   97 DPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEKIEENNNSILDANFAVMETNYSYPLTMPSEIFQ 210

[Close]

BLAST of GR393232 vs. SwissProt
Match: MAD26_ORYSJ (MADS-box transcription factor 26 OS=Oryza sativa subsp. japonica GN=MADS26 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 9.953e-17
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = -3

Query:  259 DAKEETDVLKQEIETLQKGIRYLLGGGLGT-LKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSV 525
            D K+E  VLKQEI  LQKG+RY+ G      + ++EL  LE+  E WMY++R  KM IM+QEIQA + KEG LKAAN+   + ++E   +
Sbjct:   87 DPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVEQNGL 176

[Close]

BLAST of GR393232 vs. SwissProt
Match: MAD26_ORYSI (MADS-box transcription factor 26 OS=Oryza sativa subsp. indica GN=MADS26 PE=2 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 9.953e-17
Identity = 43/90 (47.78%), Postives = 59/90 (65.56%), Query Frame = -3

Query:  259 DAKEETDVLKQEIETLQKGIRYLLGGGLGT-LKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSV 525
            D K+E  VLKQEI  LQKG+RY+ G      + ++EL  LE+  E WMY++R  KM IM+QEIQA + KEG LKAAN+   + ++E   +
Sbjct:   87 DPKQEAMVLKQEINLLQKGLRYIYGNRANEHMTVEELNALERYLEIWMYNIRSAKMQIMIQEIQALKSKEGMLKAANEILQEKIVEQNGL 176

[Close]

BLAST of GR393232 vs. SwissProt
Match: MAD33_ORYSJ (MADS-box transcription factor 33 OS=Oryza sativa subsp. japonica GN=MADS33 PE=2 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.589e-14
Identity = 38/84 (45.24%), Postives = 55/84 (65.48%), Query Frame = -3

Query:  271 AKEETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLE 522
            A++   +L++EI+ LQ+G+R   GGG G + +D+L  LEK  E W+Y +R  KM +M QEIQ  R+KEG LK AN+   + V E
Sbjct:   90 AEQGIFLLREEIDLLQRGLRSTYGGGAGEMTLDKLHALEKGLELWIYQIRTTKMQMMQQEIQFLRNKEGILKEANEMLQEKVKE 173

[Close]

BLAST of GR393232 vs. SwissProt
Match: MAD14_ORYSJ (MADS-box transcription factor 14 OS=Oryza sativa subsp. japonica GN=MADS14 PE=1 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 2.902e-8
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = -3

Query:  259 LKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSV 501
            LK ++ET+QK  ++L+G  L +L + ELQ LE+  EN + H+R  K  +ML+ I   + KE +L+  NK     ++E   V
Sbjct:   98 LKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKV 178

[Close]

BLAST of GR393232 vs. SwissProt
Match: MAD14_ORYSI (MADS-box transcription factor 14 OS=Oryza sativa subsp. indica GN=MADS14 PE=2 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.902e-8
Identity = 30/81 (37.04%), Postives = 48/81 (59.26%), Query Frame = -3

Query:  259 LKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSV 501
            LK ++ET+QK  ++L+G  L +L + ELQ LE+  EN + H+R  K  +ML+ I   + KE +L+  NK     ++E   V
Sbjct:   98 LKAKVETIQKCQKHLMGEDLESLNLKELQQLEQQLENSLKHIRSRKSQLMLESINELQRKEKSLQEENKVLQKELVEKQKV 178

[Close]

BLAST of GR393232 vs. SwissProt
Match: MAD18_ORYSJ (MADS-box transcription factor 18 OS=Oryza sativa subsp. japonica GN=MADS18 PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 9.337e-7
Identity = 29/80 (36.25%), Postives = 43/80 (53.75%), Query Frame = -3

Query:  277 EETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLV 516
            +E  +LK +++ LQK  R LLG  L TL + ELQ LE   E  + H+R  K  ++ + I   + KE +LK  N     L+
Sbjct:   93 DEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLM 172

[Close]

BLAST of GR393232 vs. SwissProt
Match: MAD18_ORYSI (MADS-box transcription factor 18 OS=Oryza sativa subsp. indica GN=MADS18 PE=2 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 9.337e-7
Identity = 29/80 (36.25%), Postives = 43/80 (53.75%), Query Frame = -3

Query:  277 EETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLV 516
            +E  +LK +++ LQK  R LLG  L TL + ELQ LE   E  + H+R  K  ++ + I   + KE +LK  N     L+
Sbjct:   93 DEYGILKSKLDALQKSQRQLLGEQLDTLTIKELQQLEHQLEYSLKHIRSKKNQLLFESISELQKKEKSLKNQNNVLQKLM 172

[Close]

BLAST of GR393232 vs. TrEMBL
Match: C6TN29_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 152.91 bits (385), Expect = 1.128e-35
Identity = 72/99 (72.73%), Postives = 86/99 (86.87%), Query Frame = -3

Query:  229 DAKEETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSVTNFVPFATDT 525
            DAKEET++LKQEI+TLQKGIR+L GGG  T+ +DELQVLEKN E W+YH+R MKMNIMLQEIQA +DKEGTLKAANKY  D ++ENT+++NF  FATDT
Sbjct:   90 DAKEETNMLKQEIQTLQKGIRHLFGGGNKTMTIDELQVLEKNLETWIYHIRSMKMNIMLQEIQALKDKEGTLKAANKYLHDKIVENTAISNFAQFATDT 188

[Close]

BLAST of GR393232 vs. TrEMBL
Match: B9SKA4_RICCO (Mads box protein, putative OS=Ricinus communis GN=RCOM_1030190 PE=3 SV=1)

HSP 1 Score: 137.502 bits (345), Expect = 4.904e-31
Identity = 66/111 (59.46%), Postives = 81/111 (72.97%), Query Frame = -3

Query:  193 DAKEETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSVTNFVPFATDTLYPLIIQDGIFQ 525
            DAKEE  +LKQEIE LQKG+R+LLGGG   + +DEL +LEKN E W+YH+R  KM IM +EIQ  R+KEG LKAAN+Y  D + EN  +TNF P  T+  YPL IQ+ IFQ
Sbjct:   94 DAKEEISMLKQEIEILQKGLRHLLGGGAAEMTLDELLILEKNLEIWIYHIRSTKMEIMAKEIQLLRNKEGILKAANQYLQDKIEENVDITNFAPMTTNFPYPLTIQNEIFQ 204

[Close]

BLAST of GR393232 vs. TrEMBL
Match: D7U912_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_41.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00025916001 PE=4 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.250e-26
Identity = 58/111 (52.25%), Postives = 77/111 (69.37%), Query Frame = -3

Query:  193 DAKEETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSVTNFVPFATDTLYPLIIQDGIFQ 525
            D KEE ++LK EIE LQKG+RY+LGGG GT+ +DEL + EK+ E W+Y++R  KM IM QEIQ  ++KEG LKAAN Y  +++ + T +TN  P      YPL  Q+ IFQ
Sbjct:   89 DTKEEINMLKHEIELLQKGLRYMLGGGAGTMTLDELHIFEKHLEIWIYNIRSAKMEIMFQEIQLLKNKEGILKAANNYLQEMIDDQTGITNIAPMINP--YPLTTQNEIFQ 197

[Close]

BLAST of GR393232 vs. TrEMBL
Match: B9MWG7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_678188 PE=3 SV=1)

HSP 1 Score: 122.865 bits (307), Expect = 1.250e-26
Identity = 61/111 (54.95%), Postives = 77/111 (69.37%), Query Frame = -3

Query:  193 DAKEETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSVTNFVPFATDTLYPLIIQDGIFQ 525
            D KEE ++LKQEIE LQKG+RY+ GG    + +DEL  LEK+ E W+Y +R  KM+IM +EIQ  R+KEG LKAAN+Y  D V EN  +TN  P  T+  YPL IQ+ IFQ
Sbjct:   91 DVKEEINMLKQEIEILQKGLRYMFGGRAAEMTLDELIELEKHLEIWIYQIRSTKMDIMFKEIQQLRNKEGILKAANQYLQDKVEENIVITNSAPITTNIPYPLTIQNEIFQ 201

[Close]

BLAST of GR393232 vs. TrEMBL
Match: Q8H279_SOLLC (TAGL12 transcription factor OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.382e-25
Identity = 59/111 (53.15%), Postives = 75/111 (67.57%), Query Frame = -3

Query:  193 DAKEETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSVTNFVPFATDTLYPLIIQDGIFQ 525
            D KEE ++LK EI+ LQKG+ Y+ GGG GT+ +DEL  LEK  E WMYH+R  KM+IM QEIQ  ++K G L+AANKY  D + E  +VTN     TD   PL +Q+ IFQ
Sbjct:   90 DPKEEINMLKNEIDVLQKGLSYMYGGGAGTMTLDELHSLEKYLEIWMYHIRSAKMDIMFQEIQLLKNKGGILEAANKYLQDKIDEQYTVTNMTQNLTDFQCPLTVQNEIFQ 200

[Close]

BLAST of GR393232 vs. TrEMBL
Match: B2KJ31_POPTO (MADS box transcription factor OS=Populus tomentosa GN=MADS2 PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.382e-25
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = -3

Query:  193 DAKEETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSVTNFVPFATDTLYPLIIQDGIFQ 525
            DA EE + LKQEIE LQKG+R++ GG    + +DEL  LEK+ E W+Y +R  K++IM +EI+  R+KEG LKAAN+Y  D V EN  +TNF P  T+  YPL IQ+ IFQ
Sbjct:   91 DANEEINKLKQEIEILQKGLRFMFGGCAAEMTLDELIGLEKHLEIWIYKIRSTKVDIMFKEIEQLRNKEGILKAANQYLQDKVEENIMITNFAPITTNIPYPLTIQNEIFQ 201

[Close]

BLAST of GR393232 vs. TrEMBL
Match: Q0WRV5_ARATH (MADS-box protein AGL12 OS=Arabidopsis thaliana GN=At1g71692 PE=2 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.430e-22
Identity = 56/114 (49.12%), Postives = 75/114 (65.79%), Query Frame = -3

Query:  193 DAKEETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSV---TNFVPFATDTLYPLIIQDGIFQ 525
            D K+E +VLKQEIE LQKGI Y+ GGG G + ++EL +LEK+ E W+  +R  KM++MLQEIQ+ R+KEG LK  NKY  + + EN +     NF    T+  YPL +   IFQ
Sbjct:   97 DPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEKIEENNNSILDANFAVMETNYSYPLTMPSEIFQ 210

[Close]

BLAST of GR393232 vs. TrEMBL
Match: Q948V0_9MAGN (Putative MADS-domain transcription factor MpMADS5 OS=Magnolia praecocissima GN=MpMADS5 PE=2 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.581e-21
Identity = 50/110 (45.45%), Postives = 72/110 (65.45%), Query Frame = -3

Query:  196 DAKEETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSVTNFVPFATDTLYPLIIQDGIF 525
            ++ +E  +LKQEIE LQKG+R  +GGG+G + MDEL  LE++ E W+YH+R  KM IM+QEIQ+ +D EG LK+AN++    + E   + +  P      YPL I + IF
Sbjct:   89 ESDQEVFMLKQEIELLQKGLRNSIGGGMGNMTMDELHALERHLELWIYHIRSTKMRIMIQEIQSLKDNEGILKSANEFLQGKIEEQNVIFDMPPMIGGIPYPLTIPNEIF 198

[Close]

BLAST of GR393232 vs. TrEMBL
Match: D7KYW8_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_476289 PE=4 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 7.848e-21
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = -3

Query:  193 KEETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSVTNFVPFA----TDTLYPLIIQDGIFQ 519
            K+E +VLKQEIE LQKGI Y+ GGG G + ++EL +LEK+ E W+  +R  KM++MLQEIQ+ R+KEG LK  NKY  + + EN +      FA    T+  YPL +   IFQ
Sbjct:   99 KDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDLMLQEIQSLRNKEGVLKNTNKYLLEKIEENNNSILDANFATVMETNYSYPLTMPSEIFQ 211

[Close]

BLAST of GR393232 vs. TrEMBL
Match: B9IQD0_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_914289 PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 6.644e-20
Identity = 52/106 (49.06%), Postives = 71/106 (66.98%), Query Frame = -3

Query:  199 ETDVLKQEIETLQKGIRYLLGG-GLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSVTNFVPFATDTLYPLIIQDGI 513
            E ++LKQEIE LQKG+RY+ G      + +DEL VLEK+ E W+Y +R  KM+IM +EIQ  R+KE  L AAN++  + V EN  +TNFV   +D  +PL IQ+ I
Sbjct:   93 EINMLKQEIEVLQKGLRYMFGARAAAEMSLDELLVLEKHLEIWIYQIRSTKMDIMFKEIQQLRNKEEILTAANQHLHNKVEENAEITNFVSVTSDFPHPLTIQNEI 198

[Close]

BLAST of GR393232 vs. TAIR peptide
Match: AT1G71692.1 (| Symbols: AGL12, XAL1 | AGAMOUS-like 12 | chr1:26952903-26954939 REVERSE LENGTH=211)

HSP 1 Score: 109.383 bits (272), Expect = 1.187e-24
Identity = 56/114 (49.12%), Postives = 75/114 (65.79%), Query Frame = -3

Query:  193 DAKEETDVLKQEIETLQKGIRYLLGGGLGTLKMDELQVLEKNFENWMYHVRPMKMNIMLQEIQAFRDKEGTLKAANKYFPDLVLENTSV---TNFVPFATDTLYPLIIQDGIFQ 525
            D K+E +VLKQEIE LQKGI Y+ GGG G + ++EL +LEK+ E W+  +R  KM++MLQEIQ+ R+KEG LK  NKY  + + EN +     NF    T+  YPL +   IFQ
Sbjct:   97 DPKDEINVLKQEIEMLQKGISYMFGGGDGAMNLEELLLLEKHLEYWISQIRSAKMDVMLQEIQSLRNKEGVLKNTNKYLLEKIEENNNSILDANFAVMETNYSYPLTMPSEIFQ 210

The following BLAST results are available for this feature:

BLAST of GR393232 vs. SwissProt
BLAST of GR393232 vs. TrEMBL
BLAST of GR393232 vs. TAIR peptide

BLAST of GR393232 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 8


Match Name	E-value	Identity	Description
AGL12_ARATH	1.098e-23	49.12	Agamous-like MADS-box protein AGL12 OS=Arabidopsis...	[more]
MAD26_ORYSJ	9.953e-17	47.78	MADS-box transcription factor 26 OS=Oryza sativa s...	[more]
MAD26_ORYSI	9.953e-17	47.78	MADS-box transcription factor 26 OS=Oryza sativa s...	[more]
MAD33_ORYSJ	1.589e-14	45.24	MADS-box transcription factor 33 OS=Oryza sativa s...	[more]
MAD14_ORYSJ	2.902e-8	37.04	MADS-box transcription factor 14 OS=Oryza sativa s...	[more]
MAD14_ORYSI	2.902e-8	37.04	MADS-box transcription factor 14 OS=Oryza sativa s...	[more]
MAD18_ORYSJ	9.337e-7	36.25	MADS-box transcription factor 18 OS=Oryza sativa s...	[more]
MAD18_ORYSI	9.337e-7	36.25	MADS-box transcription factor 18 OS=Oryza sativa s...	[more]

BLAST of GR393232 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6TN29_SOYBN	1.128e-35	72.73	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9SKA4_RICCO	4.904e-31	59.46	Mads box protein, putative OS=Ricinus communis GN=...	[more]
D7U912_VITVI	1.250e-26	52.25	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9MWG7_POPTR	1.250e-26	54.95	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q8H279_SOLLC	1.382e-25	53.15	TAGL12 transcription factor OS=Solanum lycopersicu...	[more]
B2KJ31_POPTO	1.382e-25	53.15	MADS box transcription factor OS=Populus tomentosa...	[more]
Q0WRV5_ARATH	1.430e-22	49.12	MADS-box protein AGL12 OS=Arabidopsis thaliana GN=...	[more]
Q948V0_9MAGN	1.581e-21	45.45	Putative MADS-domain transcription factor MpMADS5 ...	[more]
D7KYW8_ARALY	7.848e-21	48.67	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
B9IQD0_POPTR	6.644e-20	49.06	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]

BLAST of GR393232 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G71692.1	1.187e-24	49.12	\| Symbols: AGL12, XAL1 \| AGAMOUS-like 12 \| chr1:26...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002487	Transcription factor, K-box	PFAM	PF01486	K-box	coord: 3..78 score: 1.7
IPR002487	Transcription factor, K-box	PROFILE	PS51297	K_BOX	coord: 1..89 score: 10
None	No IPR available	PANTHER	PTHR11945	MADS BOX PROTEIN	coord: 3..78 score: 1.1
None	No IPR available	PANTHER	PTHR11945:SF19	MADS BOX PROTEIN	coord: 3..78 score: 1.1

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR393232 ID=GR393232; Name=GR393232; organism=Cicer arietinum; type=EST; length=527bp
CAAAATGTCACAATGTTTATTACATTTTTCAGCAAAGCTTGTAAAACATT
TTGTAAGTAACCTAAAGTCATTGTTCATACTCCATGAACAATGTTACACA
ATAGTCTTCGTGTTATACAGCACATTCACAATCGTTGTTATTAAAATATT
ATACATAGTGTTAATGTTTAATTTCCAACTAAATTCCTAAAGTTGAAAAA
TCCCATCTTGTATAATTAGAGGGTACAAAGTATCAGTAGCAAATGGAACA
AAGTTGGTGACTGAAGTATTCTCCAAAACCAAATCGGGGAAATATTTATT
TGCCGCCTTAAGTGTTCCCTCCTTATCTCTGAAAGCTTGAATTTCTTGTA
ACATGATGTTCATCTTCATTGGGCGAACATGATACATCCAGTTTTCAAAA
TTCTTCTCTAAAACTTGTAATTCATCCATTTTCAGTGTCCCTAATCCCCC
TCCAAGCAAATACCTGATACCCTTTTGCAATGTTTCGATTTCTTGTTTTA
GCACATCGGTTTCCTCTTTAGCATCCA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003700	DNA-binding transcription factor activity

Vocabulary: **Cellular Component**
Term	Definition
GO:0005634	nucleus

Vocabulary: **INTERPRO**
Term	Definition
IPR002487	TF_Kbox

Search form