GR401142

EST Overview


Name	GR401142
Unique Name	GR401142
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	308

Libraries


Library Name	Type
LIBEST_024783 ICC4958 Slow drought stresses root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR401142 vs. SwissProt
Match: TAR1_KLULA (Protein TAR1 OS=Kluyveromyces lactis GN=TAR1-A PE=4 SV=2)

HSP 1 Score: 64.3142 bits (155), Expect = 2.199e-10
Identity = 40/82 (48.78%), Postives = 50/82 (60.98%), Query Frame = 1

Query:    4 HSTWALSVSGRDLALEEINPPFRGAFPNYSTRRRNFTEIWDPTQRG-SPPL*LPVPGNSEGTASKGSSTNYNSGPR-ARIQI 243
            H T +LSVS + LAL+ I  P R AFPN STRR++FT  WDP   G SP +      + +G A+K  S+NYNS    AR QI
Sbjct:   28 HCTCSLSVSRQYLALDGIYHPLRAAFPNNSTRRKHFTNNWDPRHTGFSPSMTSCSKEHRQGPATKLPSSNYNSDVEDARFQI 109

[Close]

BLAST of GR401142 vs. SwissProt
Match: TAR1_YEAST (Protein TAR1 OS=Saccharomyces cerevisiae GN=TAR1 PE=2 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 2.688e-8
Identity = 39/82 (47.56%), Postives = 47/82 (57.32%), Query Frame = 1

Query:    4 HSTWALSVSGRDLALEEINPPFRGAFPNYSTRRRNFTEIWDPTQRG-SPPL*LPVPGNSEGTASKGSSTNYNSGPR-ARIQI 243
            H T +LSVS + LAL+ I  P R AFPN ST RR+FT+   P   G SP +      + +GTA K  S NYNSG    R QI
Sbjct:   43 HCTCSLSVSRQYLALDGIYHPLRAAFPNNSTLRRHFTKNRTPRHTGFSPSMTSCSKEHRQGTAPKLPSPNYNSGTEGTRFQI 124

[Close]

BLAST of GR401142 vs. TrEMBL
Match: D6VYF0_YEAST (Mitochondrial protein potentially involved in regulation of respiratory metabolism; interacts genetically with RPO41 and physically with Coq5p; encoded within the 25S rRNA gene on the opposite strand OS=Saccharomyces cerevisiae S288c GN=TAR1 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.557e-7
Identity = 39/82 (47.56%), Postives = 47/82 (57.32%), Query Frame = 1

Query:    4 HSTWALSVSGRDLALEEINPPFRGAFPNYSTRRRNFTEIWDPTQRG-SPPL*LPVPGNSEGTASKGSSTNYNSGPR-ARIQI 243
            H T +LSVS + LAL+ I  P R AFPN ST RR+FT+   P   G SP +      + +GTA K  S NYNSG    R QI
Sbjct:   43 HCTCSLSVSRQYLALDGIYHPLRAAFPNNSTLRRHFTKNRTPRHTGFSPSMTSCSKEHRQGTAPKLPSPNYNSGTEGTRFQI 124

[Close]

BLAST of GR401142 vs. TrEMBL
Match: C8ZDC9_YEAS8 (Tar1p OS=Saccharomyces cerevisiae (strain Lalvin EC1118 / Prise de mousse) GN=EC1118_1L10_2487g PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.557e-7
Identity = 39/82 (47.56%), Postives = 47/82 (57.32%), Query Frame = 1

Query:    4 HSTWALSVSGRDLALEEINPPFRGAFPNYSTRRRNFTEIWDPTQRG-SPPL*LPVPGNSEGTASKGSSTNYNSGPR-ARIQI 243
            H T +LSVS + LAL+ I  P R AFPN ST RR+FT+   P   G SP +      + +GTA K  S NYNSG    R QI
Sbjct:   43 HCTCSLSVSRQYLALDGIYHPLRAAFPNNSTLRRHFTKNRTPRHTGFSPSMTSCSKEHRQGTAPKLPSPNYNSGTEGTRFQI 124

[Close]

BLAST of GR401142 vs. TrEMBL
Match: C7GR03_YEAS2 (Tar1p OS=Saccharomyces cerevisiae (strain JAY291) GN=TAR1 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 5.557e-7
Identity = 39/82 (47.56%), Postives = 47/82 (57.32%), Query Frame = 1

Query:    4 HSTWALSVSGRDLALEEINPPFRGAFPNYSTRRRNFTEIWDPTQRG-SPPL*LPVPGNSEGTASKGSSTNYNSGPR-ARIQI 243
            H T +LSVS + LAL+ I  P R AFPN ST RR+FT+   P   G SP +      + +GTA K  S NYNSG    R QI
Sbjct:   43 HCTCSLSVSRQYLALDGIYHPLRAAFPNNSTLRRHFTKNRTPRHTGFSPSMTSCSKEHRQGTAPKLPSPNYNSGTEGTRFQI 124

The following BLAST results are available for this feature:

BLAST of GR401142 vs. SwissProt
BLAST of GR401142 vs. TrEMBL

BLAST of GR401142 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 2


Match Name	E-value	Identity	Description
TAR1_KLULA	2.199e-10	48.78	Protein TAR1 OS=Kluyveromyces lactis GN=TAR1-A PE=...	[more]
TAR1_YEAST	2.688e-8	47.56	Protein TAR1 OS=Saccharomyces cerevisiae GN=TAR1 P...	[more]

BLAST of GR401142 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 3


Match Name	E-value	Identity	Description
D6VYF0_YEAST	5.557e-7	47.56	Mitochondrial protein potentially involved in regu...	[more]
C8ZDC9_YEAS8	5.557e-7	47.56	Tar1p OS=Saccharomyces cerevisiae (strain Lalvin E...	[more]
C7GR03_YEAS2	5.557e-7	47.56	Tar1p OS=Saccharomyces cerevisiae (strain JAY291) ...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 57..76 score
None	No IPR available	SEG	seg	seg	coord: 12..27 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR401142 ID=GR401142; Name=GR401142; organism=Cicer arietinum; type=EST; length=308bp
GAACACTCCACTTGGGCGCTATCGGTCTCTGGCCGGGATTTAGCTTTAGA
AGAAATAAACCCCCCCTTTAGAGGAGCATTCCCAAACTACTCGACCCGAC
GAAGGAACTTTACAGAAATTTGGGATCCAACCCAACGGGGCTCTCCCCCT
CTATGACTTCCCGTTCCAGGGAACTCCGAAGGTACCGCATCCAAAGGATC
CTCTACAAATTACAACTCGGGCCCGAGAGCCAGAATTCAAATTTGAACTG
TTGCCGCTTCCCTCGCCGTTACCAGGGGAATCCCTGGTGGGTTCTTTTCC
CCCCCCGG

Search form