GR420459
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR420459 vs. SwissProt
Match: PSD31_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 3a OS=Arabidopsis thaliana GN=EMB2719 PE=1 SV=3) HSP 1 Score: 55.0694 bits (131), Expect = 1.312e-10 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LGKIRTI Sbjct: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI 252 HSP 2 Score: 26.1794 bits (56), Expect = 1.312e-10 Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 3 Query: 192 RYNEAKAVSSASVAWL 239 +YNEAKA SSAS+A L Sbjct: 134 KYNEAKACSSASIARL 149 HSP 3 Score: 25.0238 bits (53), Expect = 1.312e-10 Identity = 22/60 (36.67%), Postives = 23/60 (38.33%), Query Frame = 1 Query: 283 RTVDVII--------------GDLAEIRGNLAXXXXXXXXXXXXXXXXXXXXDELGQETL 420 RT+DVI GDLAEIRG L DELGQETL Sbjct: 155 RTIDVIASRLYFYYSLSYEQTGDLAEIRGTL----------LALHHSATLRHDELGQETL 204
BLAST of GR420459 vs. SwissProt
Match: PSMD3_TOBAC (Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Nicotiana tabacum GN=21D7 PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 1.694e-10 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LGKIRTI Sbjct: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFSRYLFYLGKIRTI 252 HSP 2 Score: 26.1794 bits (56), Expect = 1.694e-10 Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 3 Query: 192 RYNEAKAVSSASVAWL 239 +YNEAKA SSAS+A L Sbjct: 134 KYNEAKACSSASIARL 149 HSP 3 Score: 24.6386 bits (52), Expect = 1.694e-10 Identity = 22/60 (36.67%), Postives = 25/60 (41.67%), Query Frame = 1 Query: 241 ASRLFFLLFI*P*TRTVDVIIGDLAEIRGNLAXXXXXXXXXXXXXXXXXXXXDELGQETL 420 ASRL+F + + GDLAEIRG L DELGQETL Sbjct: 161 ASRLYFYYSL------CYELTGDLAEIRGYL----------LALHRIATLRHDELGQETL 204
BLAST of GR420459 vs. SwissProt
Match: PSMD3_DAUCA (Probable 26S proteasome non-ATPase regulatory subunit 3 OS=Daucus carota GN=21D7 PE=1 SV=2) HSP 1 Score: 55.0694 bits (131), Expect = 1.743e-9 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LGKIRTI Sbjct: 215 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI 253 HSP 2 Score: 28.1054 bits (61), Expect = 1.743e-9 Identity = 37/125 (29.60%), Postives = 48/125 (38.40%), Query Frame = 1 Query: 91 EMEVDAATSVTLTA*ARNLSD*AC-------------ATFSEKR--TSTDTMRPKLFPQLVLLG*ASRLFFLLFI*P*TRTVDVIIGDLAEIRGNLAXXXXXXXXXXXXXXXXXXXXDELGQETL 420 +MEVD A S T T +L + +SE + +S R K + + ASRL+F + + GDLAEIRGNL DELGQETL Sbjct: 97 DMEVDTAMSATTTLAKHSLPELEIYCYLLVLIFLIDQKKYSEAKACSSASIARVKNLNRRTVEVLASRLYFYYSL------SYELTGDLAEIRGNL----------LALHRIATLRHDELGQETL 205
BLAST of GR420459 vs. SwissProt
Match: PSD32_ARATH (Probable 26S proteasome non-ATPase regulatory subunit 3b OS=Arabidopsis thaliana GN=At1g75990 PE=1 SV=2) HSP 1 Score: 55.0694 bits (131), Expect = 5.265e-7 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LGKIRTI Sbjct: 213 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI 251
BLAST of GR420459 vs. TrEMBL
Match: B9H1J7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_648811 PE=4 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 1.223e-9 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LGKIRTI Sbjct: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI 252 HSP 2 Score: 27.335 bits (59), Expect = 1.223e-9 Identity = 18/41 (43.90%), Postives = 19/41 (46.34%), Query Frame = 1 Query: 298 IIGDLAEIRGNLAXXXXXXXXXXXXXXXXXXXXDELGQETL 420 + GDLAEIRGNL DELGQETL Sbjct: 174 LTGDLAEIRGNL----------LALHRVATLRHDELGQETL 204 HSP 3 Score: 24.6386 bits (52), Expect = 1.223e-9 Identity = 11/16 (68.75%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 192 RYNEAKAVSSASVAWL 239 +YNEAK SSAS+A L Sbjct: 134 KYNEAKTCSSASIARL 149
BLAST of GR420459 vs. TrEMBL
Match: B9S5K6_RICCO (26S proteasome regulatory subunit S3, putative OS=Ricinus communis GN=RCOM_0977830 PE=4 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 2.038e-9 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LGKIRTI Sbjct: 217 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI 255 HSP 2 Score: 27.335 bits (59), Expect = 2.038e-9 Identity = 18/41 (43.90%), Postives = 19/41 (46.34%), Query Frame = 1 Query: 298 IIGDLAEIRGNLAXXXXXXXXXXXXXXXXXXXXDELGQETL 420 + GDLAEIRGNL DELGQETL Sbjct: 177 LTGDLAEIRGNL----------LALHRIATLRHDELGQETL 207 HSP 3 Score: 23.8682 bits (50), Expect = 2.038e-9 Identity = 14/29 (48.28%), Postives = 18/29 (62.07%), Query Frame = 3 Query: 153 LSLCYFFRKKNINRYNEAKAVSSASVAWL 239 L L Y +K +YNEAKA S+A +A L Sbjct: 127 LVLIYLIDQK---KYNEAKACSTACIARL 152
BLAST of GR420459 vs. TrEMBL
Match: Q6EMB6_ARATH (26S proteasome subunit RPN3a OS=Arabidopsis thaliana GN=RPN3a PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 2.039e-9 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LGKIRTI Sbjct: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI 252 HSP 2 Score: 26.1794 bits (56), Expect = 2.039e-9 Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 3 Query: 192 RYNEAKAVSSASVAWL 239 +YNEAKA SSAS+A L Sbjct: 134 KYNEAKACSSASIARL 149 HSP 3 Score: 25.0238 bits (53), Expect = 2.039e-9 Identity = 22/60 (36.67%), Postives = 23/60 (38.33%), Query Frame = 1 Query: 283 RTVDVII--------------GDLAEIRGNLAXXXXXXXXXXXXXXXXXXXXDELGQETL 420 RT+DVI GDLAEIRG L DELGQETL Sbjct: 155 RTIDVIASRLYFYYSLSYEQTGDLAEIRGTL----------LALHHSATLRHDELGQETL 204
BLAST of GR420459 vs. TrEMBL
Match: D7KIA4_ARALY (EMB2719 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_472250 PE=4 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 2.039e-9 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LGKIRTI Sbjct: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI 252 HSP 2 Score: 26.1794 bits (56), Expect = 2.039e-9 Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 3 Query: 192 RYNEAKAVSSASVAWL 239 +YNEAKA SSAS+A L Sbjct: 134 KYNEAKACSSASIARL 149 HSP 3 Score: 25.0238 bits (53), Expect = 2.039e-9 Identity = 22/60 (36.67%), Postives = 23/60 (38.33%), Query Frame = 1 Query: 283 RTVDVII--------------GDLAEIRGNLAXXXXXXXXXXXXXXXXXXXXDELGQETL 420 RT+DVI GDLAEIRG L DELGQETL Sbjct: 155 RTIDVIASRLYFYYSLSYEQTGDLAEIRGTL----------LALHHSATLRHDELGQETL 204
BLAST of GR420459 vs. TrEMBL
Match: Q93ZI2_ARATH (At1g20200/T20H2_4 OS=Arabidopsis thaliana PE=2 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 2.072e-9 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LGKIRTI Sbjct: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI 252 HSP 2 Score: 26.1794 bits (56), Expect = 2.072e-9 Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 3 Query: 192 RYNEAKAVSSASVAWL 239 +YNEAKA SSAS+A L Sbjct: 134 KYNEAKACSSASIARL 149 HSP 3 Score: 25.0238 bits (53), Expect = 2.072e-9 Identity = 22/60 (36.67%), Postives = 23/60 (38.33%), Query Frame = 1 Query: 283 RTVDVII--------------GDLAEIRGNLAXXXXXXXXXXXXXXXXXXXXDELGQETL 420 RT+DVI GDLAEIRG L DELGQETL Sbjct: 155 RTIDVIASRLYFYYSLSYEQTGDLAEIRGTL----------LALHHSATLRHDELGQETL 204
BLAST of GR420459 vs. TrEMBL
Match: D7U535_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024003001 PE=4 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 1.224e-8 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LGKIRTI Sbjct: 213 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI 251 HSP 2 Score: 27.335 bits (59), Expect = 1.224e-8 Identity = 18/41 (43.90%), Postives = 19/41 (46.34%), Query Frame = 1 Query: 298 IIGDLAEIRGNLAXXXXXXXXXXXXXXXXXXXXDELGQETL 420 + GDLAEIRGNL DELGQETL Sbjct: 173 LTGDLAEIRGNL----------LALHRIATLRHDELGQETL 203 HSP 3 Score: 21.1718 bits (43), Expect = 1.224e-8 Identity = 9/16 (56.25%), Postives = 12/16 (75.00%), Query Frame = 3 Query: 192 RYNEAKAVSSASVAWL 239 +Y EAKA S+AS+ L Sbjct: 133 KYKEAKACSAASITRL 148
BLAST of GR420459 vs. TrEMBL
Match: B9HR39_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_721661 PE=4 SV=1) HSP 1 Score: 55.0694 bits (131), Expect = 5.597e-8 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LGKIRTI Sbjct: 212 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI 250 HSP 2 Score: 25.409 bits (54), Expect = 5.597e-8 Identity = 17/41 (41.46%), Postives = 19/41 (46.34%), Query Frame = 1 Query: 298 IIGDLAEIRGNLAXXXXXXXXXXXXXXXXXXXXDELGQETL 420 + GDLAEIRG+L DELGQETL Sbjct: 172 LTGDLAEIRGSL----------LALHRIATLRHDELGQETL 202 HSP 3 Score: 20.7866 bits (42), Expect = 5.597e-8 Identity = 10/16 (62.50%), Postives = 13/16 (81.25%), Query Frame = 3 Query: 192 RYNEAKAVSSASVAWL 239 ++ EAKA SSAS+A L Sbjct: 132 KHIEAKACSSASIARL 147
BLAST of GR420459 vs. TrEMBL
Match: B9R8E7_RICCO (26S proteasome regulatory subunit S3, putative OS=Ricinus communis GN=RCOM_1599350 PE=4 SV=1) HSP 1 Score: 53.1434 bits (126), Expect = 6.084e-7 Identity = 28/39 (71.79%), Postives = 29/39 (74.36%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LG IRTI Sbjct: 217 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGNIRTI 255 HSP 2 Score: 25.409 bits (54), Expect = 6.084e-7 Identity = 33/125 (26.40%), Postives = 48/125 (38.40%), Query Frame = 1 Query: 91 EMEVDAATSVTLTA*ARNLSD*ACATF---------------SEKRTSTDTMRPKLFPQLVLLG*ASRLFFLLFI*P*TRTVDVIIGDLAEIRGNLAXXXXXXXXXXXXXXXXXXXXDELGQETL 420 +MEVD+ATS T T L + + ++ +S R K + + ASRL+F + + G+LA+IRG+L DELGQETL Sbjct: 99 DMEVDSATSATRTPPKHTLPELEIYCYLLVLLFLIDRKKYNEAKACSSASIARIKNLNRRTVYVLASRLYFYY------SYIYELTGNLADIRGDL----------LALHRIATLRHDELGQETL 207
BLAST of GR420459 vs. TAIR peptide
Match: AT1G20200.1 (| Symbols: EMB2719, HAP15 | PAM domain (PCI/PINT associated module) protein | chr1:7001409-7004154 REVERSE LENGTH=488) HSP 1 Score: 55.0694 bits (131), Expect = 1.297e-11 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LGKIRTI Sbjct: 214 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI 252 HSP 2 Score: 26.1794 bits (56), Expect = 1.297e-11 Identity = 12/16 (75.00%), Postives = 14/16 (87.50%), Query Frame = 3 Query: 192 RYNEAKAVSSASVAWL 239 +YNEAKA SSAS+A L Sbjct: 134 KYNEAKACSSASIARL 149 HSP 3 Score: 25.0238 bits (53), Expect = 1.297e-11 Identity = 22/60 (36.67%), Postives = 23/60 (38.33%), Query Frame = 1 Query: 283 RTVDVII--------------GDLAEIRGNLAXXXXXXXXXXXXXXXXXXXXDELGQETL 420 RT+DVI GDLAEIRG L DELGQETL Sbjct: 155 RTIDVIASRLYFYYSLSYEQTGDLAEIRGTL----------LALHHSATLRHDELGQETL 204
BLAST of GR420459 vs. TAIR peptide
Match: AT1G75990.1 (| Symbols: | PAM domain (PCI/PINT associated module) protein | chr1:28524623-28526718 REVERSE LENGTH=487) HSP 1 Score: 55.0694 bits (131), Expect = 5.245e-8 Identity = 29/39 (74.36%), Postives = 30/39 (76.92%), Query Frame = 3 Query: 420 YYNLYDQAEKLRSKAPRFEAHSN---------LGKIRTI 509 +YNLYDQAEKLRSKAPRFEAHSN LGKIRTI Sbjct: 213 HYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTI 251 The following BLAST results are available for this feature:
BLAST of GR420459 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot) Total hits: 4
BLAST of GR420459 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 8
BLAST of GR420459 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 2
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR420459 ID=GR420459; Name=GR420459; organism=Cicer arietinum; type=EST; length=783bpback to top |