HO664274

EST Overview
NameHO664274
Unique NameHO664274
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length523
Libraries
Library NameType
LIBEST_026619 TDZ treated Chickpea SSH librarycdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Homology
BLAST of HO664274 vs. SwissProt
Match: SC61B_ARATH (Protein transport protein Sec61 subunit beta OS=Arabidopsis thaliana GN=At2g45070 PE=2 SV=1)

HSP 1 Score: 55.0694 bits (131), Expect = 2.420e-7
Identity = 30/51 (58.82%), Postives = 33/51 (64.71%), Query Frame = 2
Query:  143 GAIGSIIGTMLHLYTGDAPGLGSSPSVPVEGSCGFIAVVAALMVKGKLYVV 295
            GA G   G+ML  YT DAPGL  SP+V +  S GFIA VA L V GKLY V
Sbjct:   31 GASGGAAGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKLYFV 81          
BLAST of HO664274 vs. TrEMBL
Match: A9PF90_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_740095 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 6.748e-9
Identity = 35/64 (54.69%), Postives = 40/64 (62.50%), Query Frame = 2
Query:  116 LMRMKTADAGAIGSIIGTMLHLYTGDAPGLGSSPSVPVEGSCGFIAVVAALMVKGKLYVVLLDA 307
            + R +T   GA G   GTML  YT DAPGL  SP+V +  S GFIA VA L V GKLY+V  DA
Sbjct:   19 MRRRRTTSGGASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVVGKLYLVRRDA 82          
BLAST of HO664274 vs. TrEMBL
Match: C6T1E8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.712e-8
Identity = 34/67 (50.75%), Postives = 39/67 (58.21%), Query Frame = 2
Query:  107 TLKLMRMKTADAGAIGSIIGTMLHLYTGDAPGLGSSPSVPVEGSCGFIAVVAALMVKGKLYVVLLDA 307
            T  + R +T    A G   GTML  YT DAPGL  SP+V +  S GFIA VA L V GKLY V  +A
Sbjct:   16 TASMRRRRTTGGAASGGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRREA 82          
BLAST of HO664274 vs. TrEMBL
Match: B9RD56_RICCO (Protein transport protein Sec61 subunit beta, putative OS=Ricinus communis GN=RCOM_1609790 PE=4 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 9.744e-8
Identity = 34/67 (50.75%), Postives = 40/67 (59.70%), Query Frame = 2
Query:  107 TLKLMRMKTADAGAIGSIIGTMLHLYTGDAPGLGSSPSVPVEGSCGFIAVVAALMVKGKLYVVLLDA 307
            T  L R +T   GA G   GTML  YT D+ GL  SP+V +  S GFIA VA L V GKLY+V  +A
Sbjct:   16 TASLRRRRTTSGGASGGAAGTMLQFYTDDSSGLKISPNVVLIMSIGFIAFVAILHVVGKLYLVRREA 82          
BLAST of HO664274 vs. TrEMBL
Match: D7SLR7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00018177001 PE=4 SV=1)

HSP 1 Score: 58.5362 bits (140), Expect = 2.835e-7
Identity = 33/64 (51.56%), Postives = 37/64 (57.81%), Query Frame = 2
Query:  116 LMRMKTADAGAIGSIIGTMLHLYTGDAPGLGSSPSVPVEGSCGFIAVVAALMVKGKLYVVLLDA 307
            L R +T   G  G   G ML  YT DAPGL  SP+V +  S GFIA VA L V GKLY V  +A
Sbjct:   49 LRRRRTTSGGTAGVASGNMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRKEA 112          
BLAST of HO664274 vs. TrEMBL
Match: A9P911_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_644302 PE=4 SV=1)

HSP 1 Score: 57.3806 bits (137), Expect = 6.316e-7
Identity = 34/66 (51.52%), Postives = 40/66 (60.61%), Query Frame = 2
Query:  116 LMRMKTADAGAIGSI--IGTMLHLYTGDAPGLGSSPSVPVEGSCGFIAVVAALMVKGKLYVVLLDA 307
            + R +T   GA G     GTML  YT DAPGL  SP+V +  S GFIA VA L V GKLY+V  +A
Sbjct:   19 MRRRRTVSGGASGGAGAAGTMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVVGKLYLVRREA 84          
BLAST of HO664274 vs. TrEMBL
Match: D7SLS2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_21.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00018182001 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 8.249e-7
Identity = 32/64 (50.00%), Postives = 36/64 (56.25%), Query Frame = 2
Query:  116 LMRMKTADAGAIGSIIGTMLHLYTGDAPGLGSSPSVPVEGSCGFIAVVAALMVKGKLYVVLLDA 307
            L R +T      G   G ML  YT DAPGL  SP+V +  S GFIA VA L V GKLY V  +A
Sbjct:   60 LRRRRTTSGATAGGASGNMLQFYTDDAPGLKISPNVVLVMSIGFIAFVAILHVMGKLYFVRKEA 123          
BLAST of HO664274 vs. TAIR peptide
Match: AT2G45070.4 (| Symbols: SEC61 BETA | Preprotein translocase Sec, Sec61-beta subunit protein | chr2:18587208-18587456 REVERSE LENGTH=82)

HSP 1 Score: 55.0694 bits (131), Expect = 2.664e-8
Identity = 30/51 (58.82%), Postives = 33/51 (64.71%), Query Frame = 2
Query:  143 GAIGSIIGTMLHLYTGDAPGLGSSPSVPVEGSCGFIAVVAALMVKGKLYVV 295
            GA G   G+ML  YT DAPGL  SP+V +  S GFIA VA L V GKLY V
Sbjct:   31 GASGGAAGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKLYFV 81          
BLAST of HO664274 vs. TAIR peptide
Match: AT2G45070.3 (| Symbols: SEC61 BETA | Preprotein translocase Sec, Sec61-beta subunit protein | chr2:18587208-18587456 REVERSE LENGTH=82)

HSP 1 Score: 55.0694 bits (131), Expect = 2.664e-8
Identity = 30/51 (58.82%), Postives = 33/51 (64.71%), Query Frame = 2
Query:  143 GAIGSIIGTMLHLYTGDAPGLGSSPSVPVEGSCGFIAVVAALMVKGKLYVV 295
            GA G   G+ML  YT DAPGL  SP+V +  S GFIA VA L V GKLY V
Sbjct:   31 GASGGAAGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKLYFV 81          
BLAST of HO664274 vs. TAIR peptide
Match: AT2G45070.2 (| Symbols: SEC61 BETA | Preprotein translocase Sec, Sec61-beta subunit protein | chr2:18587208-18587456 REVERSE LENGTH=82)

HSP 1 Score: 55.0694 bits (131), Expect = 2.664e-8
Identity = 30/51 (58.82%), Postives = 33/51 (64.71%), Query Frame = 2
Query:  143 GAIGSIIGTMLHLYTGDAPGLGSSPSVPVEGSCGFIAVVAALMVKGKLYVV 295
            GA G   G+ML  YT DAPGL  SP+V +  S GFIA VA L V GKLY V
Sbjct:   31 GASGGAAGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKLYFV 81          
BLAST of HO664274 vs. TAIR peptide
Match: AT2G45070.1 (| Symbols: SEC61 BETA | Preprotein translocase Sec, Sec61-beta subunit protein | chr2:18587208-18587456 REVERSE LENGTH=82)

HSP 1 Score: 55.0694 bits (131), Expect = 2.664e-8
Identity = 30/51 (58.82%), Postives = 33/51 (64.71%), Query Frame = 2
Query:  143 GAIGSIIGTMLHLYTGDAPGLGSSPSVPVEGSCGFIAVVAALMVKGKLYVV 295
            GA G   G+ML  YT DAPGL  SP+V +  S GFIA VA L V GKLY V
Sbjct:   31 GASGGAAGSMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKLYFV 81          
BLAST of HO664274 vs. TAIR peptide
Match: AT3G60540.2 (| Symbols: | Preprotein translocase Sec, Sec61-beta subunit protein | chr3:22375132-22375377 REVERSE LENGTH=81)

HSP 1 Score: 54.6842 bits (130), Expect = 3.480e-8
Identity = 35/74 (47.30%), Postives = 40/74 (54.05%), Query Frame = 2
Query:   77 GCPLLFYVLNTLKLMRMKTAD-AGAIGSIIGTMLHLYTGDAPGLGSSPSVPVEGSCGFIAVVAALMVKGKLYVV 295
            G P       T  + R K A  + + G   GTML  YT DAPGL  SP+V +  S GFIA VA L V GKLY V
Sbjct:    5 GAPQRGSAAATASMRRRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKLYFV 78          
BLAST of HO664274 vs. TAIR peptide
Match: AT3G60540.1 (| Symbols: | Preprotein translocase Sec, Sec61-beta subunit protein | chr3:22375132-22375377 REVERSE LENGTH=81)

HSP 1 Score: 54.6842 bits (130), Expect = 3.480e-8
Identity = 35/74 (47.30%), Postives = 40/74 (54.05%), Query Frame = 2
Query:   77 GCPLLFYVLNTLKLMRMKTAD-AGAIGSIIGTMLHLYTGDAPGLGSSPSVPVEGSCGFIAVVAALMVKGKLYVV 295
            G P       T  + R K A  + + G   GTML  YT DAPGL  SP+V +  S GFIA VA L V GKLY V
Sbjct:    5 GAPQRGSAAATASMRRRKPAGGSSSAGGGAGTMLQFYTDDAPGLKISPNVVLIMSIGFIAFVAVLHVMGKLYFV 78          
The following BLAST results are available for this feature:
BLAST of HO664274 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1
Match NameE-valueIdentityDescription
SC61B_ARATH2.420e-758.82Protein transport protein Sec61 subunit beta OS=Ar... [more]
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BLAST of HO664274 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 6
Match NameE-valueIdentityDescription
A9PF90_POPTR6.748e-954.69Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
C6T1E8_SOYBN5.712e-850.75Putative uncharacterized protein OS=Glycine max PE... [more]
B9RD56_RICCO9.744e-850.75Protein transport protein Sec61 subunit beta, puta... [more]
D7SLR7_VITVI2.835e-751.56Whole genome shotgun sequence of line PN40024, sca... [more]
A9P911_POPTR6.316e-751.52Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7SLS2_VITVI8.249e-750.00Whole genome shotgun sequence of line PN40024, sca... [more]
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BLAST of HO664274 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 6
Match NameE-valueIdentityDescription
AT2G45070.42.664e-858.82| Symbols: SEC61 BETA | Preprotein translocase Sec... [more]
AT2G45070.32.664e-858.82| Symbols: SEC61 BETA | Preprotein translocase Sec... [more]
AT2G45070.22.664e-858.82| Symbols: SEC61 BETA | Preprotein translocase Sec... [more]
AT2G45070.12.664e-858.82| Symbols: SEC61 BETA | Preprotein translocase Sec... [more]
AT3G60540.23.480e-847.30| Symbols: | Preprotein translocase Sec, Sec61-be... [more]
AT3G60540.13.480e-847.30| Symbols: | Preprotein translocase Sec, Sec61-be... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13509SEC61BETA-PROV PROTEINcoord: 44..101
score: 4.5

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>HO664274 ID=HO664274; Name=HO664274; organism=Cicer arietinum; type=EST; length=523bp
TCGAGCGGCCGCCCGGGCAGGTACCCTCCAAATAACGGGACCGGGATTCG
TCAGACCGACGCGGATCCCATCTGCAGGATGTCCCCTTTTGTTTTACGTG
TTGAATACCCTGAAACTCATGAGAATGAAAACAGCTGATGCCGGGGCAAT
AGGGTCAATTATTGGAACTATGCTTCACTTGTACACAGGAGATGCCCCTG
GACTGGGAAGCTCCCCTTCTGTGCCTGTTGAAGGGAGCTGTGGCTTTATT
GCTGTTGTTGCTGCCCTTATGGTGAAGGGAAAACTTTATGTTGTTCTTTT
GGATGCTTAAAGGATTTAAATCAAGAAGGTGGGTTCAGAACACTTACTCT
GTGAATGAACTTAGATTTCTGTTGCTAGACCCACACAACCTGATGAGACG
ATATATTTCTATTTGATCATTCGGCACCTCGGCAGCGACCACGCTGGTCA
TCATTGAATTCAGCGTTGCGCCTGCTTTCTCGACCATATATTCAGAGCTC
CCAACGCATGTGGATGCAGAGGG
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