GR394688

EST Overview


Name	GR394688
Unique Name	GR394688
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	611

Libraries


Library Name	Type
LIBEST_024779 ICC1882 Slow drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

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BLAST of GR394688 vs. TrEMBL
Match: Q9SXU0_CICAR (Aspartic proteinase (Fragment) OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 2.542e-7
Identity = 37/86 (43.02%), Postives = 51/86 (59.30%), Query Frame = 2

Query:    5 SEMAATDTPLCSSCQMLVIWVQNNLKPKGEQGHTFPFCDFPVGKPSKSIPKNN*SAATIF--LGR-PTLHLLFREKPLSLLTPKKF 253
            SEM+ATDTPLCSSCQMLVIWVQN LK K  +   F +    V +  +S+P  +  +      L R P +     +KP  +LTP+++
Sbjct:   68 SEMSATDTPLCSSCQMLVIWVQNQLKQKATKERVFNY----VNQLCESLPSPSGESVISCNDLSRMPNISFTIGDKPF-VLTPEQY 148

The following BLAST results are available for this feature:

BLAST of GR394688 vs. TrEMBL

BLAST of GR394688 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 1


Match Name	E-value	Identity	Description
Q9SXU0_CICAR	2.542e-7	43.02	Aspartic proteinase (Fragment) OS=Cicer arietinum ...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 28..44 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR394688 ID=GR394688; Name=GR394688; organism=Cicer arietinum; type=EST; length=611bp
ACTGAGTGAGATGGCAGCCACAGATACTCCTCTGTGTTCTTCTTGCCAAA
TGCTTGTTATTTGGGTCCAAAATAACCTAAAACCAAAAGGGGAGCAGGGA
CACACTTTTCCTTTTTGCGATTTCCCTGTGGGAAAGCCTTCCAAGTCCAT
TCCGAAAAATAATTGATCTGCTGCAACAATCTTTCTCGGACGGCCAACAT
TACATTTACTTTTCCGAGAAAAACCCCTTTCTCTCCTTACGCCCAAAAAA
TTTTGTTTCTTATAAACCGGGCCATAAGTTTTTACATAAGGGTCCGCCCC
TTAACGCGATTTATTGCGCTTTTAAAAAATACCCCCCCCAAAAATGAGCC
CCCTTTCAGAAATTTTTTGGGGGAGATTATTTTAAAAAGGGGATATATTC
TCCATAAGCCCTTCATCACTTCTAACAAAATATTTACCAATTTGTGTTTT
CACCCTAACATACTGGCTTTATATTTCCCATTAAAAACCCCCACTACGTG
AGGAATATAATTTACTATGCGAAAAATTATTCTCTCCTTAATTTCTCCCG
TTACCGTCTATATTTGCAAAAAACATTCTGTTTGGGCGCCCTACATATAC
CACTCCCCGCT

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