GR398882

EST Overview
NameGR398882
Unique NameGR398882
TypeEST
OrganismCicer arietinum (chickpea)
Sequence length479
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Cicer arietinum unigene v1Cicer arietinum unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Cicer arietinum unigene v12010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl2010-12-28
InterProScan analysis for Cicer arietinum unigene v12010-12-29
Homology
BLAST of GR398882 vs. TrEMBL
Match: C1K3M7_VIGUN (Defensin OS=Vigna unguiculata GN=PDEF PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 2.130e-11
Identity = 37/55 (67.27%), Postives = 42/55 (76.36%), Query Frame = -1
Query:  282 MARSIPMVSPIFVFLLLLVASEMVP----EARSSESKIHNFTGPCGRDRNCASVC 434
            MARS+P+VS IFVFLLLLVA+EM P    EAR+ ES+ H F GPC  D NCASVC
Sbjct:    1 MARSVPLVSTIFVFLLLLVATEMGPTMVAEARTCESQSHRFKGPCVSDTNCASVC 55          
BLAST of GR398882 vs. TrEMBL
Match: Q39807_SOYBN (Protease inhibitor OS=Glycine max PE=4 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.292e-8
Identity = 33/56 (58.93%), Postives = 39/56 (69.64%), Query Frame = -1
Query:  282 MARSIPMVSPIFVFLLLLVASEM-----VPEARSSESKIHNFTGPCGRDRNCASVC 434
            M+RS+P+VS I V LLLLVA+EM     V EAR+ ES+ H F GPC  D NC SVC
Sbjct:    1 MSRSVPLVSTICVLLLLLVATEMMGPTMVAEARTCESQSHRFKGPCLSDTNCGSVC 56          
BLAST of GR398882 vs. TrEMBL
Match: Q945D8_CASSA (Putative gamma-thionin OS=Castanea sativa PE=4 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 1.429e-7
Identity = 31/55 (56.36%), Postives = 39/55 (70.91%), Query Frame = -1
Query:  282 MARSIPMVSPIFVFLLLLVASE----MVPEARSSESKIHNFTGPCGRDRNCASVC 434
            M+RS+ + S +FV LLLLVA++    MV EAR+ ES+ H F GPC R  NCASVC
Sbjct:    1 MSRSMRVFSTVFVVLLLLVATQYMGPMVAEARTCESQSHRFKGPCVRKSNCASVC 55          
The following BLAST results are available for this feature:
BLAST of GR398882 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 3
Match NameE-valueIdentityDescription
C1K3M7_VIGUN2.130e-1167.27Defensin OS=Vigna unguiculata GN=PDEF PE=3 SV=1[more]
Q39807_SOYBN1.292e-858.93Protease inhibitor OS=Glycine max PE=4 SV=1[more]
Q945D8_CASSA1.429e-756.36Putative gamma-thionin OS=Castanea sativa PE=4 SV=... [more]
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InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 23..36
score: NAcoord: 75..85
score
NoneNo IPR availableGENE3D3.30.30.10no descriptioncoord: 40..83
score: 7.9
NoneNo IPR availableSEGsegsegcoord: 62..83
score
NoneNo IPR availableSUPERFAMILY57095Scorpion toxin-likecoord: 37..83
score: 2.3
NoneNo IPR availableSEGsegsegcoord: 40..54
score
IPR008176Gamma thioninPFAMPF00304Gamma-thionincoord: 39..83
score: 3.6

Properties
Property NameValue
Singlet in analysisCicer arietinum unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GR398882 ID=GR398882; Name=GR398882; organism=Cicer arietinum; type=EST; length=479bp
AAACTAAGAACACATTAAATTAGTCATTTGATTCCCTTCCGCTCATAGGA
TCTAAGGATCAAACTACAAATGAACAAAGACAAAGAAAAAAATCCATAGC
AAAAGGGGGTAGGGGGAGCTTTATTCCAAAATAACACAAGGAGAAAAAGG
GGAGGGATCAATCGTCTTTTAAACTCTTTTAGGATAGGGATTAAGGGGTC
AAACATTAATTAACAATGGGGAGGACAGAAACATCTACGACGGAATCCAC
GGGAGGGCCCTCCAGGGAAACGGTCCGGGTGGCACACAGAAGCACAATTG
CGATCACGCCCACATGGTCCTGTGAAGTTGTGAATTTTTGACTCGGATGA
CCTGGCCTCGGGCACCATCTCGGAAGCGACAAGAAGGAGAAGGAAGACAA
AGATGGGGGAAACCATGGGAATTGAACGAGCCATGTTAATTTCAAAGAAA
TAAAAAGGGAACTAGTTGGGAGTCCCCGC
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Annotated Terms
The following terms have been associated with this EST:
Vocabulary: Biological Process
TermDefinition
GO:0006952defense response
Vocabulary: INTERPRO
TermDefinition
IPR008176Defensin_plant