GR408687
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GR408687 vs. SwissProt
Match: RS30_ARATH (40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1 SV=3) HSP 1 Score: 102.834 bits (255), Expect = 5.697e-22 Identity = 50/62 (80.65%), Postives = 52/62 (83.87%), Query Frame = 3 Query: 78 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 MGKVHGSLARAGKVRGQTP PRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSEK 62
BLAST of GR408687 vs. SwissProt
Match: RS30_RAT (40S ribosomal protein S30 OS=Rattus norvegicus GN=Fau PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.740e-14 Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3 Query: 84 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 257 KVHGSLARAGKVRGQTP GRA +RMQYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
BLAST of GR408687 vs. SwissProt
Match: RS30_PONAB (40S ribosomal protein S30 OS=Pongo abelii GN=FAU PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.740e-14 Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3 Query: 84 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 257 KVHGSLARAGKVRGQTP GRA +RMQYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
BLAST of GR408687 vs. SwissProt
Match: RS30_PIG (40S ribosomal protein S30 OS=Sus scrofa GN=FAU PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.740e-14 Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3 Query: 84 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 257 KVHGSLARAGKVRGQTP GRA +RMQYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
BLAST of GR408687 vs. SwissProt
Match: RS30_MUSSI (40S ribosomal protein S30 OS=Mus spicilegus GN=Fau PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.740e-14 Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3 Query: 84 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 257 KVHGSLARAGKVRGQTP GRA +RMQYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
BLAST of GR408687 vs. SwissProt
Match: RS30_MOUSE (40S ribosomal protein S30 OS=Mus musculus GN=Fau PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.740e-14 Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3 Query: 84 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 257 KVHGSLARAGKVRGQTP GRA +RMQYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
BLAST of GR408687 vs. SwissProt
Match: RS30_HUMAN (40S ribosomal protein S30 OS=Homo sapiens GN=FAU PE=1 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.740e-14 Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3 Query: 84 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 257 KVHGSLARAGKVRGQTP GRA +RMQYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
BLAST of GR408687 vs. SwissProt
Match: RS30_CRIGR (40S ribosomal protein S30 OS=Cricetulus griseus GN=FAU PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.740e-14 Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3 Query: 84 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 257 KVHGSLARAGKVRGQTP GRA +RMQYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
BLAST of GR408687 vs. SwissProt
Match: RS30_BOVIN (40S ribosomal protein S30 OS=Bos taurus GN=FAU PE=3 SV=1) HSP 1 Score: 75.485 bits (184), Expect = 9.740e-14 Identity = 37/58 (63.79%), Postives = 41/58 (70.69%), Query Frame = 3 Query: 84 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 257 KVHGSLARAGKVRGQTP GRA +RMQYNRRFV V FGKK+GPN++ Sbjct: 1 KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58
BLAST of GR408687 vs. SwissProt
Match: RS30_ORYLA (40S ribosomal protein S30 OS=Oryzias latipes GN=fau PE=3 SV=2) HSP 1 Score: 70.4774 bits (171), Expect = 3.133e-12 Identity = 35/58 (60.34%), Postives = 40/58 (68.97%), Query Frame = 3 Query: 84 KVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 257 KVHGSLARAGKVRGQTP GRA +R+QYNRRFV V FGKK+G N++ Sbjct: 1 KVHGSLARAGKVRGQTPNVDKHEEKEEEDGRAKRRIQYNRRFVNVVPTFGKKKGANAN 58
BLAST of GR408687 vs. TrEMBL
Match: Q6K853_ORYSJ (40S ribosomal protein S30-like OS=Oryza sativa subsp. japonica GN=OJ1548_F12.5 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.363e-21 Identity = 52/62 (83.87%), Postives = 52/62 (83.87%), Query Frame = 3 Query: 78 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 MGKVHGSLARAGKVRGQTP PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 62
BLAST of GR408687 vs. TrEMBL
Match: D7U045_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00016902001 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.363e-21 Identity = 52/62 (83.87%), Postives = 52/62 (83.87%), Query Frame = 3 Query: 78 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 MGKVHGSLARAGKVRGQTP PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK Sbjct: 52 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 113
BLAST of GR408687 vs. TrEMBL
Match: C6TEP1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.363e-21 Identity = 52/62 (83.87%), Postives = 52/62 (83.87%), Query Frame = 3 Query: 78 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 MGKVHGSLARAGKVRGQTP PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 62
BLAST of GR408687 vs. TrEMBL
Match: C5XV41_SORBI (Putative uncharacterized protein Sb04g036360 OS=Sorghum bicolor GN=Sb04g036360 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.363e-21 Identity = 52/62 (83.87%), Postives = 52/62 (83.87%), Query Frame = 3 Query: 78 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 MGKVHGSLARAGKVRGQTP PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 62
BLAST of GR408687 vs. TrEMBL
Match: B9RKD3_RICCO (40S ribosomal protein S30, putative OS=Ricinus communis GN=RCOM_1048490 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.363e-21 Identity = 52/62 (83.87%), Postives = 52/62 (83.87%), Query Frame = 3 Query: 78 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 MGKVHGSLARAGKVRGQTP PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 62
BLAST of GR408687 vs. TrEMBL
Match: B6SLI1_MAIZE (40S ribosomal protein S30 OS=Zea mays PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.363e-21 Identity = 52/62 (83.87%), Postives = 52/62 (83.87%), Query Frame = 3 Query: 78 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 MGKVHGSLARAGKVRGQTP PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 62
BLAST of GR408687 vs. TrEMBL
Match: A9P9H8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_575241 PE=4 SV=1) HSP 1 Score: 105.916 bits (263), Expect = 1.363e-21 Identity = 52/62 (83.87%), Postives = 52/62 (83.87%), Query Frame = 3 Query: 78 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 MGKVHGSLARAGKVRGQTP PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 62
BLAST of GR408687 vs. TrEMBL
Match: C7IZ82_ORYSJ (Os02g0804150 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os02g0804150 PE=4 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 5.178e-21 Identity = 51/61 (83.61%), Postives = 51/61 (83.61%), Query Frame = 3 Query: 81 GKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 GKVHGSLARAGKVRGQTP PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK Sbjct: 25 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 85
BLAST of GR408687 vs. TrEMBL
Match: B9FRR9_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_20291 PE=4 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 5.178e-21 Identity = 51/61 (83.61%), Postives = 51/61 (83.61%), Query Frame = 3 Query: 81 GKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 GKVHGSLARAGKVRGQTP PRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK Sbjct: 114 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 174
BLAST of GR408687 vs. TrEMBL
Match: B6SRJ3_MAIZE (40S ribosomal protein S30 OS=Zea mays PE=4 SV=1) HSP 1 Score: 103.605 bits (257), Expect = 6.763e-21 Identity = 51/62 (82.26%), Postives = 52/62 (83.87%), Query Frame = 3 Query: 78 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 MGKVHGSLARAGKVRGQTP PRGRA+KRMQYNRRFVTAVVGFGKKRGPNSSEK Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAYKRMQYNRRFVTAVVGFGKKRGPNSSEK 62
BLAST of GR408687 vs. TAIR peptide
Match: AT5G56670.1 (| Symbols: | Ribosomal protein S30 family protein | chr5:22935413-22935981 REVERSE LENGTH=62) HSP 1 Score: 102.834 bits (255), Expect = 7.082e-23 Identity = 50/62 (80.65%), Postives = 52/62 (83.87%), Query Frame = 3 Query: 78 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 MGKVHGSLARAGKVRGQTP PRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSEK 62
BLAST of GR408687 vs. TAIR peptide
Match: AT4G29390.1 (| Symbols: | Ribosomal protein S30 family protein | chr4:14465212-14465902 REVERSE LENGTH=62) HSP 1 Score: 102.834 bits (255), Expect = 7.082e-23 Identity = 50/62 (80.65%), Postives = 52/62 (83.87%), Query Frame = 3 Query: 78 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 MGKVHGSLARAGKVRGQTP PRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSEK 62
BLAST of GR408687 vs. TAIR peptide
Match: AT2G19750.1 (| Symbols: | Ribosomal protein S30 family protein | chr2:8515037-8515806 FORWARD LENGTH=62) HSP 1 Score: 102.834 bits (255), Expect = 7.082e-23 Identity = 50/62 (80.65%), Postives = 52/62 (83.87%), Query Frame = 3 Query: 78 MGKVHGSLARAGKVRGQTPXXXXXXXXXXPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 263 MGKVHGSLARAGKVRGQTP PRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSSEK Sbjct: 1 MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSSEK 62 The following BLAST results are available for this feature:
BLAST of GR408687 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot) Total hits: 10
BLAST of GR408687 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl) Total hits: 10
BLAST of GR408687 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide) Total hits: 3
InterPro
Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GR408687 ID=GR408687; Name=GR408687; organism=Cicer arietinum; type=EST; length=427bpback to top Annotated Terms
The
following terms have been associated with
this EST:
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