GR391151

EST Overview


Name	GR391151
Unique Name	GR391151
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	646

Libraries


Library Name	Type
LIBEST_024777 ICC1882 dehydration stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR391151 vs. SwissProt
Match: RS30_ARATH (40S ribosomal protein S30 OS=Arabidopsis thaliana GN=RPS30A PE=1 SV=3)

HSP 1 Score: 68.9366 bits (167), Expect = 2.535e-11
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = -2

Query:  157 GKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 324
            GK HGS   AG+ RG +PK+A+QDKK  PRG A KR ++ RRFV A VGFGKKR P
Sbjct:    2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGP 57

[Close]

BLAST of GR391151 vs. TrEMBL
Match: B9FRR9_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_20291 PE=4 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 1.141e-11
Identity = 37/57 (64.91%), Postives = 42/57 (73.68%), Query Frame = -2

Query:  157 PGKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 327
            PGK HGS   AG+ RG +PK+A+QDKK  PRG A KR +Y RRFV A VGFGKKR P
Sbjct:  113 PGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 169

[Close]

BLAST of GR391151 vs. TrEMBL
Match: Q6K853_ORYSJ (40S ribosomal protein S30-like OS=Oryza sativa subsp. japonica GN=OJ1548_F12.5 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.399e-11
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = -2

Query:  157 GKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 324
            GK HGS   AG+ RG +PK+A+QDKK  PRG A KR +Y RRFV A VGFGKKR P
Sbjct:    2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 57

[Close]

BLAST of GR391151 vs. TrEMBL
Match: D7U045_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_2.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00016902001 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.399e-11
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = -2

Query:  157 GKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 324
            GK HGS   AG+ RG +PK+A+QDKK  PRG A KR +Y RRFV A VGFGKKR P
Sbjct:   53 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 108

[Close]

BLAST of GR391151 vs. TrEMBL
Match: C7IZ82_ORYSJ (Os02g0804150 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os02g0804150 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.399e-11
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = -2

Query:  157 GKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 324
            GK HGS   AG+ RG +PK+A+QDKK  PRG A KR +Y RRFV A VGFGKKR P
Sbjct:   25 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 80

[Close]

BLAST of GR391151 vs. TrEMBL
Match: C6TEP1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.399e-11
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = -2

Query:  157 GKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 324
            GK HGS   AG+ RG +PK+A+QDKK  PRG A KR +Y RRFV A VGFGKKR P
Sbjct:    2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 57

[Close]

BLAST of GR391151 vs. TrEMBL
Match: C5XV41_SORBI (Putative uncharacterized protein Sb04g036360 OS=Sorghum bicolor GN=Sb04g036360 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.399e-11
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = -2

Query:  157 GKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 324
            GK HGS   AG+ RG +PK+A+QDKK  PRG A KR +Y RRFV A VGFGKKR P
Sbjct:    2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 57

[Close]

BLAST of GR391151 vs. TrEMBL
Match: B9RKD3_RICCO (40S ribosomal protein S30, putative OS=Ricinus communis GN=RCOM_1048490 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.399e-11
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = -2

Query:  157 GKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 324
            GK HGS   AG+ RG +PK+A+QDKK  PRG A KR +Y RRFV A VGFGKKR P
Sbjct:    2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 57

[Close]

BLAST of GR391151 vs. TrEMBL
Match: B6SLI1_MAIZE (40S ribosomal protein S30 OS=Zea mays PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.399e-11
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = -2

Query:  157 GKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 324
            GK HGS   AG+ RG +PK+A+QDKK  PRG A KR +Y RRFV A VGFGKKR P
Sbjct:    2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 57

[Close]

BLAST of GR391151 vs. TrEMBL
Match: A9P9H8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_575241 PE=4 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 7.399e-11
Identity = 36/56 (64.29%), Postives = 41/56 (73.21%), Query Frame = -2

Query:  157 GKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 324
            GK HGS   AG+ RG +PK+A+QDKK  PRG A KR +Y RRFV A VGFGKKR P
Sbjct:    2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 57

[Close]

BLAST of GR391151 vs. TrEMBL
Match: B9F436_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_08768 PE=4 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.663e-11
Identity = 36/57 (63.16%), Postives = 41/57 (71.93%), Query Frame = -2

Query:  157 PGKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 327
            P K HGS   AG+ RG +PK+A+QDKK  PRG A KR +Y RRFV A VGFGKKR P
Sbjct:   12 PRKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGP 68

[Close]

BLAST of GR391151 vs. TAIR peptide
Match: AT5G56670.1 (| Symbols: | Ribosomal protein S30 family protein | chr5:22935413-22935981 REVERSE LENGTH=62)

HSP 1 Score: 68.9366 bits (167), Expect = 2.595e-12
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = -2

Query:  157 GKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 324
            GK HGS   AG+ RG +PK+A+QDKK  PRG A KR ++ RRFV A VGFGKKR P
Sbjct:    2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGP 57

[Close]

BLAST of GR391151 vs. TAIR peptide
Match: AT4G29390.1 (| Symbols: | Ribosomal protein S30 family protein | chr4:14465212-14465902 REVERSE LENGTH=62)

HSP 1 Score: 68.9366 bits (167), Expect = 2.595e-12
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = -2

Query:  157 GKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 324
            GK HGS   AG+ RG +PK+A+QDKK  PRG A KR ++ RRFV A VGFGKKR P
Sbjct:    2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGP 57

[Close]

BLAST of GR391151 vs. TAIR peptide
Match: AT2G19750.1 (| Symbols: | Ribosomal protein S30 family protein | chr2:8515037-8515806 FORWARD LENGTH=62)

HSP 1 Score: 68.9366 bits (167), Expect = 2.595e-12
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = -2

Query:  157 GKDHGSAPHAGQPRGHSPKLAEQDKKVIPRGPAPKRKRYYRRFVPAGVGFGKKRCP 324
            GK HGS   AG+ RG +PK+A+QDKK  PRG A KR ++ RRFV A VGFGKKR P
Sbjct:    2 GKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGP 57

The following BLAST results are available for this feature:

BLAST of GR391151 vs. SwissProt
BLAST of GR391151 vs. TrEMBL
BLAST of GR391151 vs. TAIR peptide

BLAST of GR391151 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 1


Match Name	E-value	Identity	Description
RS30_ARATH	2.535e-11	62.50	40S ribosomal protein S30 OS=Arabidopsis thaliana ...	[more]

BLAST of GR391151 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9FRR9_ORYSJ	1.141e-11	64.91	Putative uncharacterized protein OS=Oryza sativa s...	[more]
Q6K853_ORYSJ	7.399e-11	64.29	40S ribosomal protein S30-like OS=Oryza sativa sub...	[more]
D7U045_VITVI	7.399e-11	64.29	Whole genome shotgun sequence of line PN40024, sca...	[more]
C7IZ82_ORYSJ	7.399e-11	64.29	Os02g0804150 protein (Fragment) OS=Oryza sativa su...	[more]
C6TEP1_SOYBN	7.399e-11	64.29	Putative uncharacterized protein OS=Glycine max PE...	[more]
C5XV41_SORBI	7.399e-11	64.29	Putative uncharacterized protein Sb04g036360 OS=So...	[more]
B9RKD3_RICCO	7.399e-11	64.29	40S ribosomal protein S30, putative OS=Ricinus com...	[more]
B6SLI1_MAIZE	7.399e-11	64.29	40S ribosomal protein S30 OS=Zea mays PE=4 SV=1	[more]
A9P9H8_POPTR	7.399e-11	64.29	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9F436_ORYSJ	9.663e-11	63.16	Putative uncharacterized protein OS=Oryza sativa s...	[more]

BLAST of GR391151 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT5G56670.1	2.595e-12	62.50	\| Symbols: \| Ribosomal protein S30 family protein...	[more]
AT4G29390.1	2.595e-12	62.50	\| Symbols: \| Ribosomal protein S30 family protein...	[more]
AT2G19750.1	2.595e-12	62.50	\| Symbols: \| Ribosomal protein S30 family protein...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 90..103 score
None	No IPR available	SEG	seg	seg	coord: 11..26 score
IPR006846	Ribosomal protein S30	PANTHER	PTHR12650	40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI	coord: 16..72 score: 3.1
IPR006846	Ribosomal protein S30	PFAM	PF04758	Ribosomal_S30	coord: 17..69 score: 9.7

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR391151 ID=GR391151; Name=GR391151; organism=Cicer arietinum; type=EST; length=646bp
CCTTAACAAGCACAAAAAGAACTCTTGCAGACAACAAAAGTCGAAAATTC
CATAGTGCCACTCCAACGGGTGAGATTAATCCAAAGCAGGATTAAATTCC
ATAAACTACTTAAAAAAGCTTCCGCCACTCATGATCCTCACTTCTCAAAT
GAGCCTAGGGCAGCGCTTCTTTCCAAATCCCACACCGGCGGGGACGAAAC
GCCGATAGTATCGCTTACGCTTGGGAGCAGGTCCTCGGGGGATCACCTTT
TTGTCTTGCTCAGCAAGTTTGGGAGAATGTCCTCTCGGTTGTCCAGCATG
TGGAGCAGAACCATGATCCTTACCCGGCGAAAAGAAAAAGTTGCGAATCG
CCCTCCCCGAATGGAGTCGCTATGGTGGCGGCCAGCGAATTCGTGCGCGT
AACCCCGGTTTAATCACTAGAGACCCCCGGGCACTCCCGTAGGAAAACCC
TATGGAACAGCTTCCCACCCATCGTGGAGAGACATCCTGCGCACCCCATG
CGGTCTATTAGAAATTTTTGGCGTATCCCCTGGCCACCCCTGCTCCCCCG
CGGGAAAATGGTAGTTTCGCCCCGCGGAACCCCCTCTTAACCTCCCCAAG
AGAGAAACCCTACCGTGGTAAAATCTGGCGCTGGCTATAGGACGCA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003735	structural constituent of ribosome

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006412	translation

Vocabulary: **INTERPRO**
Term	Definition
IPR006846	Ribosomal_eS30

Search form