GR395858

EST Overview


Name	GR395858
Unique Name	GR395858
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	524

Libraries


Library Name	Type
LIBEST_024781 ICC4958 dehydration stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR395858 vs. TrEMBL
Match: A9PCI4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_572995 PE=4 SV=1)

HSP 1 Score: 64.6994 bits (156), Expect = 3.956e-9
Identity = 36/58 (62.07%), Postives = 39/58 (67.24%), Query Frame = 2

Query:   89 TPRV-HAIRIKFSSPSTSNHHQNFHIPFVNSPVRSNGREFKSAKRKVPTGSNPLHNKR 259
            TPR  HA R  FS+PSTS   Q F  PF  SP     +EF+S KRKVPTGSNPLHNKR
Sbjct:   19 TPRSSHAARRSFSAPSTSQ--QVFRSPFRASPFAERAKEFESQKRKVPTGSNPLHNKR 74

[Close]

BLAST of GR395858 vs. TrEMBL
Match: B9GTV1_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_645063 PE=4 SV=1)

HSP 1 Score: 56.9954 bits (136), Expect = 8.249e-7
Identity = 31/55 (56.36%), Postives = 33/55 (60.00%), Query Frame = 2

Query:   95 RVHAIRIKFSSPSTSNHHQNFHIPFVNSPVRSNGREFKSAKRKVPTGSNPLHNKR 259
            R HAIR   S+PSTS   Q F  PF  SP      EF S KR+VP G NPLHNKR
Sbjct:   22 RSHAIRGSSSAPSTSQ--QVFRSPFSPSPFAQRAEEFASQKRRVPAGPNPLHNKR 74

The following BLAST results are available for this feature:

BLAST of GR395858 vs. TrEMBL

BLAST of GR395858 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 2


Match Name	E-value	Identity	Description
A9PCI4_POPTR	3.956e-9	62.07	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9GTV1_POPTR	8.249e-7	56.36	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 4..16 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR395858 ID=GR395858; Name=GR395858; organism=Cicer arietinum; type=EST; length=524bp
TTTATTTGTTTTTATTTTTCTTCTTATTATTATACTTTGAAATATGAAGC
ACTTCCATTTCTTTCTCCTCCTTTCTCTTCTTTTCCTCACACCAAGAGTT
CATGCTATTAGGATCAAATTCTCAAGTCCTTCTACTTCAAATCATCACCA
AAATTTTCATATTCCATTTGTTAATTCTCCGGTAAGAAGCAACGGTAGAG
AATTCAAATCAGCAAAACGAAAAGTGCCTACAGGATCCAACCCTTTACAC
AACAAGAGATAGTTTGATTTCTCAACAGGTTTTTTGGTGGCAAAATCCAT
TGTTCAGATAGTATAGTCACATATATAATATATGGTTTCTTTTAGTTATT
TATTTGTTTATTATATACTAGAGATACATAACTACTTATGATATATATGG
TAGTAGAGTTTAGGTTGAATTTGTTTGTGATATTAAATTATTAGAAAATA
GTGATTGTTTAGTTAGACTTGTAGACATTAAAGAGTCTTGTACAGAAGGT
AGTTAAATAGGATTTTGAATTTTT

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