GR402279

EST Overview


Name	GR402279
Unique Name	GR402279
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	487

Libraries


Library Name	Type
LIBEST_024785 ICCV2 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR402279 vs. SwissProt
Match: SPD1_PEA (Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 PE=2 SV=1)

HSP 1 Score: 173.711 bits (439), Expect = 3.894e-43
Identity = 80/89 (89.89%), Postives = 82/89 (92.13%), Query Frame = -1

Query:  221 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASKAN 487
            DIV NCRQ+FKGSVNYAWTTVPTYPSGMIGFM C TEGPSVDFKHPVNPIDEND QQA RPLKFYN E+HSAAFCLPSFAKRAIASK N
Sbjct:  246 DIVVNCRQVFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDENDSQQAARPLKFYNREIHSAAFCLPSFAKRAIASKEN 334

[Close]

BLAST of GR402279 vs. SwissProt
Match: SPDE_COFAR (Spermidine synthase OS=Coffea arabica PE=2 SV=1)

HSP 1 Score: 160.999 bits (406), Expect = 2.612e-39
Identity = 74/90 (82.22%), Postives = 80/90 (88.89%), Query Frame = -1

Query:  221 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQAT-RPLKFYNSELHSAAFCLPSFAKRAIASKAN 487
            DIV NCRQIFKGSVNYAWTTVPTYPSG+IGFM C TEGP VDFKHP+NPID NDG+  T +PLKFYNSE+HSAAFCLPSFAK+ I SKAN
Sbjct:  227 DIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPPVDFKHPINPIDANDGRSKTMKPLKFYNSEIHSAAFCLPSFAKKVIDSKAN 316

[Close]

BLAST of GR402279 vs. SwissProt
Match: SPD2_PEA (Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 PE=2 SV=1)

HSP 1 Score: 159.073 bits (401), Expect = 9.926e-39
Identity = 72/87 (82.76%), Postives = 77/87 (88.51%), Query Frame = -1

Query:  227 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASK 487
            DIV NCR IFKGSVNYAWTTVPTYPSGMIGFM C TEGP VDFKHPVNPID+ D Q++ RPLKFYNSE+H+AAFCLPSFAKR I SK
Sbjct:  254 DIVSNCRHIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPIDQKDCQKSVRPLKFYNSEIHTAAFCLPSFAKRKIGSK 340

[Close]

BLAST of GR402279 vs. SwissProt
Match: SPD1_HYONI (Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 1.585e-36
Identity = 67/87 (77.01%), Postives = 75/87 (86.21%), Query Frame = -1

Query:  227 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASK 487
            +IV NCRQIFKGSVNYAWTTVPTYPSGMIGFM C TEGP+VDFK+P+NPID+  G +   PLKFYNSE+H A+FCLPSFAKR I SK
Sbjct:  227 EIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPIDDESGPKTIAPLKFYNSEIHQASFCLPSFAKRVIESK 313

[Close]

BLAST of GR402279 vs. SwissProt
Match: SPD2_HYONI (Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.070e-36
Identity = 70/89 (78.65%), Postives = 77/89 (86.52%), Query Frame = -1

Query:  224 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATR-PLKFYNSELHSAAFCLPSFAKRAIASKA 487
            DIV NCRQIFKGSVNYAWTTVPTYPSG+IGFM C TEGP+VDFK+P+NPID +D    TR PLKFYNSE+HSA+FCLPSFAKR I S A
Sbjct:  219 DIVSNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKNPINPIDADDSHTKTRGPLKFYNSEIHSASFCLPSFAKRVIESNA 307

[Close]

BLAST of GR402279 vs. SwissProt
Match: SPD1_DATST (Spermidine synthase 1 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 2.070e-36
Identity = 69/88 (78.41%), Postives = 77/88 (87.50%), Query Frame = -1

Query:  227 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATR-PLKFYNSELHSAAFCLPSFAKRAIASK 487
            DIV NCRQIFKGSVNYAWTTVPTYPSG+IGFM C TEGP+VDFK+P+NP+D +D    TR PLKFYNSE+HSA+FCLPSFAKR I SK
Sbjct:  219 DIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKNPINPVDADDSHTKTRGPLKFYNSEIHSASFCLPSFAKRVIESK 306

[Close]

BLAST of GR402279 vs. SwissProt
Match: SPD1_ARATH (Spermidine synthase 1 OS=Arabidopsis thaliana GN=SPDSYN1 PE=1 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 4.611e-36
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = -1

Query:  221 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASKAN 487
            DIV NCR+IFKGSVNYAWT+VPTYPSG+IGFM C TEGP VDFKHP+NPIDE+   ++  PLKFYN+E+HSAAFCLPSFAK+ I SKAN
Sbjct:  247 DIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEGPDVDFKHPLNPIDES-SSKSNGPLKFYNAEIHSAAFCLPSFAKKVIESKAN 334

[Close]

BLAST of GR402279 vs. SwissProt
Match: SPDE_SOLLC (Spermidine synthase OS=Solanum lycopersicum GN=SPDSYN PE=2 SV=1)

HSP 1 Score: 148.288 bits (373), Expect = 1.752e-35
Identity = 65/87 (74.71%), Postives = 75/87 (86.21%), Query Frame = -1

Query:  227 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASK 487
            +IV NCRQIFKGSVNYAWTTVPTYPSGMIGFM C TEGP+VDFK+P+NPID+    ++  PLKFYNSE+H A+FCLPSFAKR I +K
Sbjct:  254 EIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPIDDESPAKSIEPLKFYNSEIHQASFCLPSFAKRVIETK 340

[Close]

BLAST of GR402279 vs. SwissProt
Match: SPD2_DATST (Spermidine synthase 2 OS=Datura stramonium PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 3.903e-35
Identity = 65/87 (74.71%), Postives = 74/87 (85.06%), Query Frame = -1

Query:  227 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASK 487
            +IV NCR+IFKGSVNYAWTTVPTYPSGMIGFM C TEGP+VDFK+P+NPID+    Q   PLKFYNSE+H A+FCLPSFAKR I +K
Sbjct:  229 EIVANCREIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPIDDESHGQTIGPLKFYNSEIHQASFCLPSFAKRVIETK 315

[Close]

BLAST of GR402279 vs. SwissProt
Match: SPDE_NICSY (Spermidine synthase OS=Nicotiana sylvestris PE=2 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 8.695e-35
Identity = 67/88 (76.14%), Postives = 75/88 (85.23%), Query Frame = -1

Query:  227 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQAT-RPLKFYNSELHSAAFCLPSFAKRAIASK 487
            +IV NCRQIFKGSVNYAWTTVPTYPSGMIGFM C TEGP+VDFK+P+NPID++     T  P+KFYNSELH A+FCLPSFAKR I SK
Sbjct:  225 EIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKNPINPIDDDASHNKTLGPMKFYNSELHKASFCLPSFAKRVIESK 312

[Close]

BLAST of GR402279 vs. TrEMBL
Match: A2VC28_LOTJA (Spermidine synthase (Fragment) OS=Lotus japonicus GN=spds PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 2.619e-41
Identity = 78/89 (87.64%), Postives = 82/89 (92.13%), Query Frame = -1

Query:  221 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASKAN 487
            DIV NCRQIFKGSVNYAWTTVPTYPSGMIGFM C TEGPSVDFKHPVNPIDE+D QQ+ RPLKFYN E+HSAAFCLPSFAKRAI +KAN
Sbjct:  240 DIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPSVDFKHPVNPIDEDDSQQSARPLKFYNREIHSAAFCLPSFAKRAIGAKAN 328

[Close]

BLAST of GR402279 vs. TrEMBL
Match: C6T8I7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 168.703 bits (426), Expect = 1.698e-40
Identity = 76/89 (85.39%), Postives = 82/89 (92.13%), Query Frame = -1

Query:  221 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASKAN 487
            DIV NCRQIFKGSVNYAWTTVPTYPSGMIGFM C TEGP VDFKHPVNPIDEN+ Q++ RPLKFYNSE+H+AAFCLPSFAKR I+SKAN
Sbjct:  169 DIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDENESQKSVRPLKFYNSEIHTAAFCLPSFAKRKISSKAN 257

[Close]

BLAST of GR402279 vs. TrEMBL
Match: B9HVB2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_833545 PE=3 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 5.462e-39
Identity = 74/88 (84.09%), Postives = 79/88 (89.77%), Query Frame = -1

Query:  224 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASKA 487
            DIV NCRQIFKGSVNYAWTTVPTYPSGMIGFM C TEGP+VDFKHPVNPID ND Q  ++PLKFYNSELH+AAFCLPSFAK+ I SKA
Sbjct:  247 DIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPAVDFKHPVNPIDSNDSQSKSKPLKFYNSELHTAAFCLPSFAKKVIDSKA 334

[Close]

BLAST of GR402279 vs. TrEMBL
Match: C6THA0_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 162.54 bits (410), Expect = 1.217e-38
Identity = 75/89 (84.27%), Postives = 80/89 (89.89%), Query Frame = -1

Query:  221 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASKAN 487
            DIV NCRQIFKGS+NYAWTTVPTYPSGMIGFM C TEGP VDFKHPVNPI+END QQ +RPLKFYNSE+H+AAFCLPSFAKR I SK N
Sbjct:  253 DIVANCRQIFKGSINYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPINENDSQQ-SRPLKFYNSEIHTAAFCLPSFAKRKIGSKTN 340

[Close]

BLAST of GR402279 vs. TrEMBL
Match: C6T918_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 161.77 bits (408), Expect = 2.076e-38
Identity = 75/89 (84.27%), Postives = 79/89 (88.76%), Query Frame = -1

Query:  221 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASKAN 487
            DIV NCRQIFKGSVNYAWTTVPTYPSGMIGFM C TEGP VDFKHPVNP+ END QQ +RPLKFYNSE+H+AAFCLPSFAKR I SK N
Sbjct:  251 DIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPLVDFKHPVNPLSENDSQQ-SRPLKFYNSEIHTAAFCLPSFAKRKIGSKTN 338

[Close]

BLAST of GR402279 vs. TrEMBL
Match: B9HJS6_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_657096 PE=3 SV=1)

HSP 1 Score: 157.918 bits (398), Expect = 2.997e-37
Identity = 72/88 (81.82%), Postives = 78/88 (88.64%), Query Frame = -1

Query:  224 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASKA 487
            DIV NCRQIFKGSVNYAWTTVPTYPSGMIGFM C TEGP VDFKHPVNPID +D Q+ ++PLKFYNSELH+AAFCLPSFAK+ I S A
Sbjct:  247 DIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDVDDSQRKSKPLKFYNSELHTAAFCLPSFAKKVIDSGA 334

[Close]

BLAST of GR402279 vs. TrEMBL
Match: B9T7V2_RICCO (Spermidine synthase 1, putative OS=Ricinus communis GN=RCOM_0285840 PE=3 SV=1)

HSP 1 Score: 157.147 bits (396), Expect = 5.112e-37
Identity = 73/88 (82.95%), Postives = 79/88 (89.77%), Query Frame = -1

Query:  224 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASKA 487
            DIV NCRQIFKGSVNYAWTTVPTYPSG+IGFM C TEGPSVDFKHPVNPID  D  ++TRPLKFYNSE+HSAAFCLPSFAK+ I +KA
Sbjct:  259 DIVANCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPSVDFKHPVNPIDAKD-SKSTRPLKFYNSEIHSAAFCLPSFAKKVIDAKA 345

[Close]

BLAST of GR402279 vs. TrEMBL
Match: A0EVX4_9FABA (Spermidine synthase OS=Ammopiptanthus mongolicus PE=2 SV=1)

HSP 1 Score: 156.762 bits (395), Expect = 6.677e-37
Identity = 71/84 (84.52%), Postives = 76/84 (90.48%), Query Frame = -1

Query:  236 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAI 487
            DIV NCRQIFKGSVNYAWTTVPTYPSGMIGFM C TEGP VDFKH VNPIDEN+ Q++ RPLKFYNSE+H+AAFCLPSFAKR I
Sbjct:  252 DIVANCRQIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHSVNPIDENECQKSVRPLKFYNSEIHTAAFCLPSFAKRKI 335

[Close]

BLAST of GR402279 vs. TrEMBL
Match: Q0VIL9_PHAVU (Spermidine synthase (Fragment) OS=Phaseolus vulgaris GN=spesyn PE=2 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.537e-36
Identity = 69/81 (85.19%), Postives = 74/81 (91.36%), Query Frame = -1

Query:  245 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAK 487
            DIV NCR IFKGSVNYAWTTVPTYPSGMIGFM C TEGP VDFKHPVNPIDEN+ Q++ RPLKFYNSE+H+AAFCLPSFAK
Sbjct:  158 DIVSNCRHIFKGSVNYAWTTVPTYPSGMIGFMLCSTEGPPVDFKHPVNPIDENECQKSARPLKFYNSEIHTAAFCLPSFAK 238

[Close]

BLAST of GR402279 vs. TrEMBL
Match: D7TNQ7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_26.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00020222001 PE=4 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 1.259e-35
Identity = 70/88 (79.55%), Postives = 79/88 (89.77%), Query Frame = -1

Query:  227 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQ-QATRPLKFYNSELHSAAFCLPSFAKRAIASK 487
            DIV NCRQIFKGSVNYAWTTVPTYPSG+IGFM C TEGP+VDFKHPVNPID N+   +++RPLKFYNSE+H+AAFCLPSFAK+ I SK
Sbjct:  208 DIVTNCRQIFKGSVNYAWTTVPTYPSGVIGFMLCSTEGPAVDFKHPVNPIDANESACKSSRPLKFYNSEIHAAAFCLPSFAKKVIDSK 295

[Close]

BLAST of GR402279 vs. TAIR peptide
Match: AT1G23820.1 (| Symbols: SPDS1 | spermidine synthase 1 | chr1:8420278-8422724 FORWARD LENGTH=378)

HSP 1 Score: 150.214 bits (378), Expect = 5.276e-37
Identity = 68/89 (76.40%), Postives = 78/89 (87.64%), Query Frame = -1

Query:  221 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQATRPLKFYNSELHSAAFCLPSFAKRAIASKAN 487
            DIV NCR+IFKGSVNYAWT+VPTYPSG+IGFM C TEGP VDFKHP+NPIDE+   ++  PLKFYN+E+HSAAFCLPSFAK+ I SKAN
Sbjct:  291 DIVSNCREIFKGSVNYAWTSVPTYPSGVIGFMLCSTEGPDVDFKHPLNPIDES-SSKSNGPLKFYNAEIHSAAFCLPSFAKKVIESKAN 378

[Close]

BLAST of GR402279 vs. TAIR peptide
Match: AT1G70310.1 (| Symbols: SPDS2 | spermidine synthase 2 | chr1:26485497-26487352 REVERSE LENGTH=340)

HSP 1 Score: 135.576 bits (340), Expect = 1.345e-32
Identity = 63/90 (70.00%), Postives = 75/90 (83.33%), Query Frame = -1

Query:  221 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQ-QATRPLKFYNSELHSAAFCLPSFAKRAIASKAN 487
            DIV NCR IFKGSVNYAWT+VPTYPSG+IGFM C +EGP VDFK PV+ ID ++   ++  PLK+YN+E+HSAAFCLPSFAK+ I SKAN
Sbjct:  251 DIVSNCRDIFKGSVNYAWTSVPTYPSGVIGFMLCSSEGPQVDFKKPVSLIDTDESSIKSHCPLKYYNAEIHSAAFCLPSFAKKVIDSKAN 340

[Close]

BLAST of GR402279 vs. TAIR peptide
Match: AT5G53120.6 (| Symbols: SPDS3 | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=386)

HSP 1 Score: 115.931 bits (289), Expect = 1.103e-26
Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = -1

Query:  230 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQA-TRPLKFYNSELHSAAFCLPSFAKRAIAS 487
            D++  CRQ FK SV+YAW++VPTYPSG+IGF+ C TEGP+VDFK+P+NPI++ DG     R LKFYNS++H AAF LP+F +R +AS
Sbjct:  297 DMISICRQTFK-SVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDGAMTHKRELKFYNSDMHRAAFALPTFLRREVAS 382

[Close]

BLAST of GR402279 vs. TAIR peptide
Match: AT5G53120.5 (| Symbols: SPDS3, SPMS | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=359)

HSP 1 Score: 115.931 bits (289), Expect = 1.103e-26
Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = -1

Query:  230 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQA-TRPLKFYNSELHSAAFCLPSFAKRAIAS 487
            D++  CRQ FK SV+YAW++VPTYPSG+IGF+ C TEGP+VDFK+P+NPI++ DG     R LKFYNS++H AAF LP+F +R +AS
Sbjct:  270 DMISICRQTFK-SVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDGAMTHKRELKFYNSDMHRAAFALPTFLRREVAS 355

[Close]

BLAST of GR402279 vs. TAIR peptide
Match: AT5G53120.4 (| Symbols: SPDS3, SPMS | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=359)

HSP 1 Score: 115.931 bits (289), Expect = 1.103e-26
Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = -1

Query:  230 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQA-TRPLKFYNSELHSAAFCLPSFAKRAIAS 487
            D++  CRQ FK SV+YAW++VPTYPSG+IGF+ C TEGP+VDFK+P+NPI++ DG     R LKFYNS++H AAF LP+F +R +AS
Sbjct:  270 DMISICRQTFK-SVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDGAMTHKRELKFYNSDMHRAAFALPTFLRREVAS 355

[Close]

BLAST of GR402279 vs. TAIR peptide
Match: AT5G53120.3 (| Symbols: SPDS3, SPMS | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=359)

HSP 1 Score: 115.931 bits (289), Expect = 1.103e-26
Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = -1

Query:  230 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQA-TRPLKFYNSELHSAAFCLPSFAKRAIAS 487
            D++  CRQ FK SV+YAW++VPTYPSG+IGF+ C TEGP+VDFK+P+NPI++ DG     R LKFYNS++H AAF LP+F +R +AS
Sbjct:  270 DMISICRQTFK-SVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDGAMTHKRELKFYNSDMHRAAFALPTFLRREVAS 355

[Close]

BLAST of GR402279 vs. TAIR peptide
Match: AT5G53120.2 (| Symbols: SPDS3, SPMS | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=359)

HSP 1 Score: 115.931 bits (289), Expect = 1.103e-26
Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = -1

Query:  230 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQA-TRPLKFYNSELHSAAFCLPSFAKRAIAS 487
            D++  CRQ FK SV+YAW++VPTYPSG+IGF+ C TEGP+VDFK+P+NPI++ DG     R LKFYNS++H AAF LP+F +R +AS
Sbjct:  270 DMISICRQTFK-SVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDGAMTHKRELKFYNSDMHRAAFALPTFLRREVAS 355

[Close]

BLAST of GR402279 vs. TAIR peptide
Match: AT5G53120.1 (| Symbols: SPDS3, SPMS, ATSPDS3 | spermidine synthase 3 | chr5:21535429-21537653 FORWARD LENGTH=359)

HSP 1 Score: 115.931 bits (289), Expect = 1.103e-26
Identity = 53/87 (60.92%), Postives = 70/87 (80.46%), Query Frame = -1

Query:  230 DIVGNCRQIFKGSVNYAWTTVPTYPSGMIGFMFCPTEGPSVDFKHPVNPIDENDGQQA-TRPLKFYNSELHSAAFCLPSFAKRAIAS 487
            D++  CRQ FK SV+YAW++VPTYPSG+IGF+ C TEGP+VDFK+P+NPI++ DG     R LKFYNS++H AAF LP+F +R +AS
Sbjct:  270 DMISICRQTFK-SVHYAWSSVPTYPSGVIGFVLCSTEGPAVDFKNPINPIEKLDGAMTHKRELKFYNSDMHRAAFALPTFLRREVAS 355

[Close]

BLAST of GR402279 vs. TAIR peptide
Match: AT1G23820.2 (| Symbols: SPDS1 | spermidine synthase 1 | chr1:8420278-8422480 FORWARD LENGTH=327)

HSP 1 Score: 54.299 bits (129), Expect = 3.940e-8
Identity = 22/25 (88.00%), Postives = 24/25 (96.00%), Query Frame = -1

Query:  413 DIVGNCRQIFKGSVNYAWTTVPTYP 487
            DIV NCR+IFKGSVNYAWT+VPTYP
Sbjct:  291 DIVSNCREIFKGSVNYAWTSVPTYP 315

The following BLAST results are available for this feature:

BLAST of GR402279 vs. SwissProt
BLAST of GR402279 vs. TrEMBL
BLAST of GR402279 vs. TAIR peptide

BLAST of GR402279 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
SPD1_PEA	3.894e-43	89.89	Spermidine synthase 1 OS=Pisum sativum GN=SPDSYN1 ...	[more]
SPDE_COFAR	2.612e-39	82.22	Spermidine synthase OS=Coffea arabica PE=2 SV=1	[more]
SPD2_PEA	9.926e-39	82.76	Spermidine synthase 2 OS=Pisum sativum GN=SPDSYN2 ...	[more]
SPD1_HYONI	1.585e-36	77.01	Spermidine synthase 1 OS=Hyoscyamus niger PE=2 SV=...	[more]
SPD2_HYONI	2.070e-36	78.65	Spermidine synthase 2 OS=Hyoscyamus niger PE=2 SV=...	[more]
SPD1_DATST	2.070e-36	78.41	Spermidine synthase 1 OS=Datura stramonium PE=2 SV...	[more]
SPD1_ARATH	4.611e-36	76.40	Spermidine synthase 1 OS=Arabidopsis thaliana GN=S...	[more]
SPDE_SOLLC	1.752e-35	74.71	Spermidine synthase OS=Solanum lycopersicum GN=SPD...	[more]
SPD2_DATST	3.903e-35	74.71	Spermidine synthase 2 OS=Datura stramonium PE=2 SV...	[more]
SPDE_NICSY	8.695e-35	76.14	Spermidine synthase OS=Nicotiana sylvestris PE=2 S...	[more]

BLAST of GR402279 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
A2VC28_LOTJA	2.619e-41	87.64	Spermidine synthase (Fragment) OS=Lotus japonicus ...	[more]
C6T8I7_SOYBN	1.698e-40	85.39	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9HVB2_POPTR	5.462e-39	84.09	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
C6THA0_SOYBN	1.217e-38	84.27	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6T918_SOYBN	2.076e-38	84.27	Putative uncharacterized protein OS=Glycine max PE...	[more]
B9HJS6_POPTR	2.997e-37	81.82	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9T7V2_RICCO	5.112e-37	82.95	Spermidine synthase 1, putative OS=Ricinus communi...	[more]
A0EVX4_9FABA	6.677e-37	84.52	Spermidine synthase OS=Ammopiptanthus mongolicus P...	[more]
Q0VIL9_PHAVU	2.537e-36	85.19	Spermidine synthase (Fragment) OS=Phaseolus vulgar...	[more]
D7TNQ7_VITVI	1.259e-35	79.55	Whole genome shotgun sequence of line PN40024, sca...	[more]

BLAST of GR402279 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 9


Match Name	E-value	Identity	Description
AT1G23820.1	5.276e-37	76.40	\| Symbols: SPDS1 \| spermidine synthase 1 \| chr1:84...	[more]
AT1G70310.1	1.345e-32	70.00	\| Symbols: SPDS2 \| spermidine synthase 2 \| chr1:26...	[more]
AT5G53120.6	1.103e-26	60.92	\| Symbols: SPDS3 \| spermidine synthase 3 \| chr5:21...	[more]
AT5G53120.5	1.103e-26	60.92	\| Symbols: SPDS3, SPMS \| spermidine synthase 3 \| c...	[more]
AT5G53120.4	1.103e-26	60.92	\| Symbols: SPDS3, SPMS \| spermidine synthase 3 \| c...	[more]
AT5G53120.3	1.103e-26	60.92	\| Symbols: SPDS3, SPMS \| spermidine synthase 3 \| c...	[more]
AT5G53120.2	1.103e-26	60.92	\| Symbols: SPDS3, SPMS \| spermidine synthase 3 \| c...	[more]
AT5G53120.1	1.103e-26	60.92	\| Symbols: SPDS3, SPMS, ATSPDS3 \| spermidine synth...	[more]
AT1G23820.2	3.940e-8	88.00	\| Symbols: SPDS1 \| spermidine synthase 1 \| chr1:84...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001045	Spermine synthase	PANTHER	PTHR11558	SPERMIDINE/SPERMINE SYNTHASE	coord: 1..87 score: 2.3
IPR001045	Spermine synthase	PFAM	PF01564	Spermine_synth	coord: 3..44 score: 1.6
IPR001045	Spermine synthase	PROFILE	PS51006	SPERMIDINE_SYNTHASE_2	coord: 1..85 score: 18
None	No IPR available	GENE3D	3.40.50.150	no description	coord: 2..85 score: 5.1
None	No IPR available	PANTHER	PTHR11558:SF11	SPERMIDINE SYNTHASE	coord: 1..87 score: 2.3
None	No IPR available	SUPERFAMILY	53335	S-adenosyl-L-methionine-dependent methyltransferases	coord: 1..86 score: 5.3

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR402279 ID=GR402279; Name=GR402279; organism=Cicer arietinum; type=EST; length=487bp
GTAAAAAGCATGCATATGCGCATTAAACAAAAGTTCCATATTGTGAATAA
TGTTTAAGGTAAGTTCCCTAAGAACTGAATCCATCAACTACAACTCATTT
CATGAAATAAAAAGTTACACTTCAATGTCAACTTGAAGAACTAATTTATT
CCACGCTTCATTGACGGATGGATCGATCGATATCCAAAAGTGCCCTTTCA
ATCACATGAAAATGTTCTCAATTAGCTTTAGAAGCAATCGCCCTCTTAGC
AAAAGATGGCAAACAGAAAGCGGCTGAATGAAGCTCTGAGTTGTAAAATT
TCAATGGTCTTGTTGCCTGCTGGCCATCATTCTCATCTATAGGATTCACT
GGATGCTTGAAATCGACGGAAGGGCCTTCGGTTGGGCAGAACATAAAACC
AATCATCCCACTTGGGTACGTAGGAACCGTGGTCCAAGCATAGTTGACAG
AGCCTTTGAATATCTGGCGACAATTCCCTACAATGTC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003824	catalytic activity

Vocabulary: **INTERPRO**
Term	Definition
IPR001045	Spermi_synthase

Search form