GR404105

EST Overview


Name	GR404105
Unique Name	GR404105
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	339

Libraries


Library Name	Type
LIBEST_024785 ICCV2 Salinity-stressed chickpea root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR404105 vs. SwissProt
Match: HAT22_ARATH (Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1)

HSP 1 Score: 53.9138 bits (128), Expect = 2.959e-7
Identity = 28/51 (54.90%), Postives = 30/51 (58.82%), Query Frame = -1

Query:  208 TLTMCPFCERLGGVSGGGASN-------KTTFFMAPKPHFYNPFTNFFAAC 339
            TLTMCP CERLGG   GG +        K  F +  KP FYNPFTN  AAC
Sbjct:  228 TLTMCPSCERLGGGGVGGDTTAVDEETAKGAFSIVTKPRFYNPFTNPSAAC 278

[Close]

BLAST of GR404105 vs. SwissProt
Match: HAT9_ARATH (Homeobox-leucine zipper protein HAT9 OS=Arabidopsis thaliana GN=HAT9 PE=2 SV=2)

HSP 1 Score: 53.1434 bits (126), Expect = 5.047e-7
Identity = 27/60 (45.00%), Postives = 33/60 (55.00%), Query Frame = -1

Query:  208 TLTMCPFCERLGGVSGG----------------GASNKTTFFMAPKPHFYNPFTNFFAAC 339
            TLT CP CER+GG  GG                G++ K  F ++ KPHF+NPFTN  AAC
Sbjct:  215 TLTKCPSCERIGGGGGGNGGGGGGSGATAVIVDGSTAKGAFSISSKPHFFNPFTNPSAAC 274

[Close]

BLAST of GR404105 vs. TrEMBL
Match: C6TNV3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 4.350e-12
Identity = 35/44 (79.55%), Postives = 36/44 (81.82%), Query Frame = -1

Query:  208 TLTMCPFCERLGGVSGGGASNKTTFFMAPKPHFYNPFTNFFAAC 339
            TLTMCP CERLGGVS  G SNK+ F MAPKPHFYNPF N FAAC
Sbjct:  241 TLTMCPSCERLGGVSDNG-SNKSPFSMAPKPHFYNPFANPFAAC 283

[Close]

BLAST of GR404105 vs. TrEMBL
Match: C6TKS6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.820e-11
Identity = 34/46 (73.91%), Postives = 35/46 (76.09%), Query Frame = -1

Query:  208 TLTMCPFCERLGGV--SGGGASNKTTFFMAPKPHFYNPFTNFFAAC 339
            TLTMCP CERLGG    GGG S KT F MAPKPHF+NPF N FAAC
Sbjct:  267 TLTMCPSCERLGGGINGGGGGSPKTPFSMAPKPHFFNPFANPFAAC 312

[Close]

BLAST of GR404105 vs. TrEMBL
Match: C6TNB1_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.828e-10
Identity = 32/44 (72.73%), Postives = 35/44 (79.55%), Query Frame = -1

Query:  208 TLTMCPFCERLGGVSGGGASNKTTFFMAPKPHFYNPFTNFFAAC 339
            TLTMCP C+RLGGV+  G SNK+ F MAPKPHFYNPF N  AAC
Sbjct:  241 TLTMCPSCDRLGGVNDNG-SNKSPFSMAPKPHFYNPFANPSAAC 283

[Close]

BLAST of GR404105 vs. TrEMBL
Match: D7UE94_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_732.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00002447001 PE=4 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.072e-10
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = -1

Query:  208 TLTMCPFCERLGGVSGGGASNKTTFFMAPKPHFYNPFTNFFAAC 339
            TLTMCP CER+GGV+ G  ++K+ F MAPKPHFYNPFTN  AAC
Sbjct:  225 TLTMCPSCERIGGVTDG--ASKSPFTMAPKPHFYNPFTNPSAAC 266

[Close]

BLAST of GR404105 vs. TrEMBL
Match: A5B626_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_022980 PE=3 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 4.072e-10
Identity = 31/44 (70.45%), Postives = 36/44 (81.82%), Query Frame = -1

Query:  208 TLTMCPFCERLGGVSGGGASNKTTFFMAPKPHFYNPFTNFFAAC 339
            TLTMCP CER+GGV+ G  ++K+ F MAPKPHFYNPFTN  AAC
Sbjct:  242 TLTMCPSCERIGGVTDG--ASKSPFTMAPKPHFYNPFTNPSAAC 283

[Close]

BLAST of GR404105 vs. TrEMBL
Match: B9H6N8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_862442 PE=3 SV=1)

HSP 1 Score: 64.3142 bits (155), Expect = 4.502e-9
Identity = 29/44 (65.91%), Postives = 34/44 (77.27%), Query Frame = -1

Query:  208 TLTMCPFCERLGGVSGGGASNKTTFFMAPKPHFYNPFTNFFAAC 339
            TLTMCP CER+GG  GG  ++K++F M PKPHFYN FTN  AAC
Sbjct:  225 TLTMCPSCERIGG--GGDGASKSSFSMVPKPHFYNTFTNPSAAC 266

[Close]

BLAST of GR404105 vs. TrEMBL
Match: B9SX72_RICCO (Homeobox protein, putative OS=Ricinus communis GN=RCOM_0858310 PE=3 SV=1)

HSP 1 Score: 63.1586 bits (152), Expect = 1.003e-8
Identity = 32/45 (71.11%), Postives = 33/45 (73.33%), Query Frame = -1

Query:  208 TLTMCPFCERLGGVSGGGASNKTTFFMAPKP-HFYNPFTNFFAAC 339
            TLTMCP CER+GGV G  AS    F MAPKP HFYNPFTN  AAC
Sbjct:  246 TLTMCPSCERIGGV-GDAASKNNPFSMAPKPHHFYNPFTNPSAAC 289

[Close]

BLAST of GR404105 vs. TrEMBL
Match: B9HFT7_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_718007 PE=3 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.811e-8
Identity = 32/44 (72.73%), Postives = 34/44 (77.27%), Query Frame = -1

Query:  208 TLTMCPFCERLGGVSGGGASNKTTFFMAPKPHFYNPFTNFFAAC 339
            TLTMCP CER+GGV G GAS K+ F MA KPHFYN FTN  AAC
Sbjct:  188 TLTMCPSCERIGGV-GEGAS-KSPFSMATKPHFYNSFTNPSAAC 229

[Close]

BLAST of GR404105 vs. TrEMBL
Match: B7FKS4_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.811e-8
Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = -1

Query:  208 TLTMCPFCERLGGVS-GGGASNK-TTFFMAPKPHFYNPFTNFFAAC 339
            TL++CP CERLG V+ GGG SNK T F MAP  HFYNPF N  AAC
Sbjct:  225 TLSICPSCERLGRVTDGGGGSNKITAFTMAPNTHFYNPFNNPSAAC 270

[Close]

BLAST of GR404105 vs. TrEMBL
Match: B7FHI3_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.811e-8
Identity = 31/46 (67.39%), Postives = 34/46 (73.91%), Query Frame = -1

Query:  208 TLTMCPFCERLGGVS-GGGASNK-TTFFMAPKPHFYNPFTNFFAAC 339
            TL++CP CERLG V+ GGG SNK T F MAP  HFYNPF N  AAC
Sbjct:  224 TLSICPSCERLGRVADGGGGSNKITAFTMAPNTHFYNPFNNPSAAC 269

[Close]

BLAST of GR404105 vs. TAIR peptide
Match: AT4G37790.1 (| Symbols: HAT22 | Homeobox-leucine zipper protein family | chr4:17768241-17769272 FORWARD LENGTH=278)

HSP 1 Score: 53.9138 bits (128), Expect = 2.351e-8
Identity = 28/51 (54.90%), Postives = 30/51 (58.82%), Query Frame = -1

Query:  208 TLTMCPFCERLGGVSGGGASN-------KTTFFMAPKPHFYNPFTNFFAAC 339
            TLTMCP CERLGG   GG +        K  F +  KP FYNPFTN  AAC
Sbjct:  228 TLTMCPSCERLGGGGVGGDTTAVDEETAKGAFSIVTKPRFYNPFTNPSAAC 278

[Close]

BLAST of GR404105 vs. TAIR peptide
Match: AT2G22800.1 (| Symbols: HAT9 | Homeobox-leucine zipper protein family | chr2:9704949-9706048 REVERSE LENGTH=274)

HSP 1 Score: 53.1434 bits (126), Expect = 4.010e-8
Identity = 27/60 (45.00%), Postives = 33/60 (55.00%), Query Frame = -1

Query:  208 TLTMCPFCERLGGVSGG----------------GASNKTTFFMAPKPHFYNPFTNFFAAC 339
            TLT CP CER+GG  GG                G++ K  F ++ KPHF+NPFTN  AAC
Sbjct:  215 TLTKCPSCERIGGGGGGNGGGGGGSGATAVIVDGSTAKGAFSISSKPHFFNPFTNPSAAC 274

The following BLAST results are available for this feature:

BLAST of GR404105 vs. SwissProt
BLAST of GR404105 vs. TrEMBL
BLAST of GR404105 vs. TAIR peptide

BLAST of GR404105 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 2


Match Name	E-value	Identity	Description
HAT22_ARATH	2.959e-7	54.90	Homeobox-leucine zipper protein HAT22 OS=Arabidops...	[more]
HAT9_ARATH	5.047e-7	45.00	Homeobox-leucine zipper protein HAT9 OS=Arabidopsi...	[more]

BLAST of GR404105 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6TNV3_SOYBN	4.350e-12	79.55	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6TKS6_SOYBN	2.820e-11	73.91	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6TNB1_SOYBN	1.828e-10	72.73	Putative uncharacterized protein OS=Glycine max PE...	[more]
D7UE94_VITVI	4.072e-10	70.45	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5B626_VITVI	4.072e-10	70.45	Putative uncharacterized protein OS=Vitis vinifera...	[more]
B9H6N8_POPTR	4.502e-9	65.91	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9SX72_RICCO	1.003e-8	71.11	Homeobox protein, putative OS=Ricinus communis GN=...	[more]
B9HFT7_POPTR	3.811e-8	72.73	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B7FKS4_MEDTR	3.811e-8	67.39	Putative uncharacterized protein OS=Medicago trunc...	[more]
B7FHI3_MEDTR	3.811e-8	67.39	Putative uncharacterized protein OS=Medicago trunc...	[more]

BLAST of GR404105 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT4G37790.1	2.351e-8	54.90	\| Symbols: HAT22 \| Homeobox-leucine zipper protein...	[more]
AT2G22800.1	4.010e-8	45.00	\| Symbols: HAT9 \| Homeobox-leucine zipper protein ...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 33..46 score
None	No IPR available	SEG	seg	seg	coord: 11..19 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR404105 ID=GR404105; Name=GR404105; organism=Cicer arietinum; type=EST; length=339bp
CAGTAAAAAAGTAATTTTGATAAGTAATTACTAATTTCTACACAGTATTA
ATTAATTACATCCTTAATCTTTCACTACTAGCTAGATGTAGTTCACATAC
GTTTCCCCTCAACCCAAAAAATACAAAGGTTGTGTGGGTGGAACTTTTTT
TTGTTTCCTTTTGAAGTTTTGCATAGCTTTGAAAACTAAAATCCCAAGAA
CAAATCAACACGCTGCAAAAAAATTGGTGAAGGGATTGTAAAAGTGAGGC
TTAGGAGCCATAAAGAAAGTGGTTTTATTGGAAGCACCACCACCACTAAC
ACCACCAAGCCTCTCACAAAAGGGACACATGGTAAGTGT

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