GR912130

EST Overview


Name	GR912130
Unique Name	GR912130
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	254

Libraries


Library Name	Type
LIBEST_024968 Early immune responsive suppression subtracted cDNA libraries of Chickpea (Cicer arietinum cv. JG-62) wilt	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR912130 vs. SwissProt
Match: GLYM_SOLTU (Serine hydroxymethyltransferase, mitochondrial OS=Solanum tuberosum PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 7.453e-19
Identity = 48/76 (63.16%), Postives = 50/76 (65.79%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            Y D  +TTTHKSLRGPR  MIFYR           E   YD+EDKIN AVFP LQGGPHNH I  LAVA  QATTP
Sbjct:  277 YADVVTTTTHKSLRGPRGAMIFYRKGVKEVNKQGKE-VFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTP 351

[Close]

BLAST of GR912130 vs. SwissProt
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 7.453e-19
Identity = 44/77 (57.14%), Postives = 53/77 (68.83%), Query Frame = 3

Query:   21 RYCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            ++ D  +TTTHK+LRG R+G+IFYR           +   Y FED+INFAVFPSLQGGPHNH I A+AVA  QA TP
Sbjct:  269 KHADVVTTTTHKTLRGARSGLIFYRKGVRTVDPKTGQEIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP 345

[Close]

BLAST of GR912130 vs. SwissProt
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 92.0485 bits (227), Expect = 9.734e-19
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 3

Query:   21 RYCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            ++ D  +TTTHK+LRG R+G+IFYR               Y FED+INFAVFPSLQGGPHNH I A+AVA  QA TP
Sbjct:  269 KHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP 345

[Close]

BLAST of GR912130 vs. SwissProt
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 9.734e-19
Identity = 44/77 (57.14%), Postives = 52/77 (67.53%), Query Frame = 3

Query:   21 RYCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            ++ D  +TTTHK+LRG R+G+IFYR               Y FED+INFAVFPSLQGGPHNH I A+AVA  QA TP
Sbjct:  269 KHADIVTTTTHKTLRGARSGLIFYRKGVQAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTP 345

[Close]

BLAST of GR912130 vs. SwissProt
Match: GLYC_NEUCR (Serine hydroxymethyltransferase, cytosolic OS=Neurospora crassa GN=for PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 1.660e-18
Identity = 44/76 (57.89%), Postives = 50/76 (65.79%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            Y D  +TTTHKSLRGPR  MIF+R           +  +YD EDKINF+VFP  QGGPHNH I ALAVA  QA +P
Sbjct:  239 YADVVTTTTHKSLRGPRGAMIFFRRGVRSVDAKTGKETLYDLEDKINFSVFPGHQGGPHNHTITALAVALKQAASP 314

[Close]

BLAST of GR912130 vs. SwissProt
Match: GLYM_PEA (Serine hydroxymethyltransferase, mitochondrial OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.169e-18
Identity = 47/76 (61.84%), Postives = 50/76 (65.79%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            Y D  +TTTHKSLRGPR  MIF+R           E   YD+EDKIN AVFP LQGGPHNH I  LAVA  QATTP
Sbjct:  277 YADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKE-VFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATTP 351

[Close]

BLAST of GR912130 vs. SwissProt
Match: GLYC_ASHGO (Serine hydroxymethyltransferase, cytosolic OS=Ashbya gossypii GN=SHM2 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 2.169e-18
Identity = 44/76 (57.89%), Postives = 48/76 (63.16%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            Y D  +TTTHKSLRGPR  MIF+R           E  +YD E  INF+VFP  QGGPHNH I ALA A  QATTP
Sbjct:  238 YADIVTTTTHKSLRGPRGAMIFFRRGVRSVHPKTGEEVMYDLEGPINFSVFPGHQGGPHNHTISALATALKQATTP 313

[Close]

BLAST of GR912130 vs. SwissProt
Match: GLYM_ARATH (Serine hydroxymethyltransferase, mitochondrial OS=Arabidopsis thaliana GN=SHM1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 3.699e-18
Identity = 47/75 (62.67%), Postives = 50/75 (66.67%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATT 248
            Y D  +TTTHKSLRGPR  MIF+R           E  +YDFEDKIN AVFP LQGGPHNH I  LAVA  QATT
Sbjct:  276 YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKE-VLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATT 349

[Close]

BLAST of GR912130 vs. SwissProt
Match: GLYN_FLAPR (Serine hydroxymethyltransferase 2, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 8.241e-18
Identity = 46/75 (61.33%), Postives = 50/75 (66.67%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATT 248
            Y D  +TTTHKSLRGPR  MIF+R           E  +YD+EDKIN AVFP LQGGPHNH I  LAVA  QATT
Sbjct:  277 YADVVTTTTHKSLRGPRGAMIFFRKGVKEVNKQGKE-VLYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATT 350

[Close]

BLAST of GR912130 vs. SwissProt
Match: GLYM_FLAPR (Serine hydroxymethyltransferase 1, mitochondrial OS=Flaveria pringlei PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 1.406e-17
Identity = 46/75 (61.33%), Postives = 49/75 (65.33%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATT 248
            Y D  +TTTHKSLRGPR  MIF+R           E   YD+EDKIN AVFP LQGGPHNH I  LAVA  QATT
Sbjct:  277 YADVVTTTTHKSLRGPRGAMIFFRKGLKEVNKQGKE-VFYDYEDKINQAVFPGLQGGPHNHTITGLAVALKQATT 350

[Close]

BLAST of GR912130 vs. TrEMBL
Match: C6ZJY7_SOYBN (Serine hydroxymethyltransferase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.402e-26
Identity = 59/77 (76.62%), Postives = 61/77 (79.22%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTPG 254
            YCD  +TTTHKSLRGPRAGMIFYR           ENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVA  QA +PG
Sbjct:  259 YCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAASPG 335

[Close]

BLAST of GR912130 vs. TrEMBL
Match: C6ZJY6_SOYBN (Serine hydroxymethyltransferase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.402e-26
Identity = 59/77 (76.62%), Postives = 61/77 (79.22%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTPG 254
            YCD  +TTTHKSLRGPRAGMIFYR           ENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVA  QA +PG
Sbjct:  234 YCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAASPG 310

[Close]

BLAST of GR912130 vs. TrEMBL
Match: C6THM7_SOYBN (Serine hydroxymethyltransferase OS=Glycine max PE=2 SV=1)

HSP 1 Score: 122.479 bits (306), Expect = 1.402e-26
Identity = 59/77 (76.62%), Postives = 61/77 (79.22%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTPG 254
            YCD  +TTTHKSLRGPRAGMIFYR           ENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVA  QA +PG
Sbjct:  234 YCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAASPG 310

[Close]

BLAST of GR912130 vs. TrEMBL
Match: A9P855_POPTR (Serine hydroxymethyltransferase OS=Populus trichocarpa GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 1.832e-26
Identity = 59/77 (76.62%), Postives = 60/77 (77.92%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTPG 254
            YCD  +TTTHKSLRGPRAGMIFYR           ENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVA  Q  TPG
Sbjct:  234 YCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQVQTPG 310

[Close]

BLAST of GR912130 vs. TrEMBL
Match: A9PL04_POPTM (Serine hydroxymethyltransferase OS=Populus tremuloides GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 2.392e-26
Identity = 58/77 (75.32%), Postives = 60/77 (77.92%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTPG 254
            YCD  +TTTHKSLRGPRAGMIFYR           ENAVYDFEDK+NFAVFPSLQGGPHNHQIGALAVA  Q  TPG
Sbjct:  234 YCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPENAVYDFEDKVNFAVFPSLQGGPHNHQIGALAVALKQVQTPG 310

[Close]

BLAST of GR912130 vs. TrEMBL
Match: Q9FPJ3_ARATH (Serine hydroxymethyltransferase OS=Arabidopsis thaliana GN=AT4g13930/dl3005c PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.960e-26
Identity = 58/77 (75.32%), Postives = 60/77 (77.92%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTPG 254
            YCD  +TTTHKSLRGPRAGMIFYR           E AVYDFEDKINFAVFP+LQGGPHNHQIGALAVA  QA TPG
Sbjct:  234 YCDVVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGGPHNHQIGALAVALKQANTPG 310

[Close]

BLAST of GR912130 vs. TrEMBL
Match: Q8LBY1_ARATH (Serine hydroxymethyltransferase OS=Arabidopsis thaliana PE=2 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.960e-26
Identity = 58/77 (75.32%), Postives = 60/77 (77.92%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTPG 254
            YCD  +TTTHKSLRGPRAGMIFYR           E AVYDFEDKINFAVFP+LQGGPHNHQIGALAVA  QA TPG
Sbjct:  234 YCDVVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGGPHNHQIGALAVALKQANTPG 310

[Close]

BLAST of GR912130 vs. TrEMBL
Match: O23254_ARATH (Serine hydroxymethyltransferase OS=Arabidopsis thaliana GN=dl3005c PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.960e-26
Identity = 58/77 (75.32%), Postives = 60/77 (77.92%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTPG 254
            YCD  +TTTHKSLRGPRAGMIFYR           E AVYDFEDKINFAVFP+LQGGPHNHQIGALAVA  QA TPG
Sbjct:  234 YCDVVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGGPHNHQIGALAVALKQANTPG 310

[Close]

BLAST of GR912130 vs. TrEMBL
Match: D7MHA0_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_915517 PE=4 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.960e-26
Identity = 58/77 (75.32%), Postives = 60/77 (77.92%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTPG 254
            YCD  +TTTHKSLRGPRAGMIFYR           E AVYDFEDKINFAVFP+LQGGPHNHQIGALAVA  QA TPG
Sbjct:  234 YCDVVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGGPHNHQIGALAVALKQANTPG 310

[Close]

BLAST of GR912130 vs. TrEMBL
Match: B9N0U0_POPTR (Serine hydroxymethyltransferase OS=Populus trichocarpa GN=SHMT6 PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 6.960e-26
Identity = 58/77 (75.32%), Postives = 61/77 (79.22%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTPG 254
            YCD  +TTTHKSLRGPRAGMIFYR           E+AVYDFEDKINFAVFPSLQGGPHNHQIGALAVA  QA +PG
Sbjct:  234 YCDIVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEDAVYDFEDKINFAVFPSLQGGPHNHQIGALAVALKQAQSPG 310

[Close]

BLAST of GR912130 vs. TAIR peptide
Match: AT4G13930.1 (| Symbols: SHM4 | serine hydroxymethyltransferase 4 | chr4:8048013-8050021 REVERSE LENGTH=471)

HSP 1 Score: 120.168 bits (300), Expect = 2.705e-28
Identity = 58/77 (75.32%), Postives = 60/77 (77.92%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTPG 254
            YCD  +TTTHKSLRGPRAGMIFYR           E AVYDFEDKINFAVFP+LQGGPHNHQIGALAVA  QA TPG
Sbjct:  234 YCDVVTTTTHKSLRGPRAGMIFYRKGPKPPKKGQPEGAVYDFEDKINFAVFPALQGGPHNHQIGALAVALKQANTPG 310

[Close]

BLAST of GR912130 vs. TAIR peptide
Match: AT4G13890.1 (| Symbols: SHM5, EDA36, EDA37 | Pyridoxal phosphate (PLP)-dependent transferases superfamily protein | chr4:8032146-8033718 REVERSE LENGTH=470)

HSP 1 Score: 96.6709 bits (239), Expect = 3.202e-21
Identity = 47/76 (61.84%), Postives = 53/76 (69.74%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            YCD  +T+THKSLRGPRAGMIFYR           E  VYDF+ KIN AVFP+LQ GPHN++IGALAVA  Q   P
Sbjct:  234 YCDVVTTSTHKSLRGPRAGMIFYRKGPKPAKKGQPEGEVYDFDAKINSAVFPALQSGPHNNKIGALAVALKQVMAP 309

[Close]

BLAST of GR912130 vs. TAIR peptide
Match: AT1G22020.1 (| Symbols: SHM6 | serine hydroxymethyltransferase 6 | chr1:7754599-7757087 FORWARD LENGTH=599)

HSP 1 Score: 92.0485 bits (227), Expect = 7.888e-20
Identity = 45/81 (55.56%), Postives = 54/81 (66.67%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXX-----ENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            YCD  ++TTHKSLRGPR G+IFY+                 N  YDFE+KINF+VFPSLQGGPHN+ I ALA+A  QA +P
Sbjct:  364 YCDIVTSTTHKSLRGPRGGIIFYKRGLKPKKQSINLNHCESNIQYDFEEKINFSVFPSLQGGPHNNHIAALAIALKQAASP 444

[Close]

BLAST of GR912130 vs. TAIR peptide
Match: AT4G37930.1 (| Symbols: SHM1, STM, SHMT1 | serine transhydroxymethyltransferase 1 | chr4:17831891-17834742 REVERSE LENGTH=517)

HSP 1 Score: 90.1225 bits (222), Expect = 2.997e-19
Identity = 47/75 (62.67%), Postives = 50/75 (66.67%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATT 248
            Y D  +TTTHKSLRGPR  MIF+R           E  +YDFEDKIN AVFP LQGGPHNH I  LAVA  QATT
Sbjct:  276 YADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKE-VLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQATT 349

[Close]

BLAST of GR912130 vs. TAIR peptide
Match: AT5G26780.2 (| Symbols: SHM2 | serine hydroxymethyltransferase 2 | chr5:9418299-9421725 FORWARD LENGTH=533)

HSP 1 Score: 88.1965 bits (217), Expect = 1.139e-18
Identity = 45/76 (59.21%), Postives = 50/76 (65.79%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            Y D  +TTTHKSLRGPR  MIF+R           E  +YD+ED+IN AVFP LQGGPHNH I  LAVA  QA TP
Sbjct:  276 YADVVTTTTHKSLRGPRGAMIFFRKGLKEINKQGKE-VMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQARTP 350

[Close]

BLAST of GR912130 vs. TAIR peptide
Match: AT5G26780.3 (| Symbols: SHM2 | serine hydroxymethyltransferase 2 | chr5:9418299-9421725 FORWARD LENGTH=533)

HSP 1 Score: 88.1965 bits (217), Expect = 1.139e-18
Identity = 45/76 (59.21%), Postives = 50/76 (65.79%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            Y D  +TTTHKSLRGPR  MIF+R           E  +YD+ED+IN AVFP LQGGPHNH I  LAVA  QA TP
Sbjct:  276 YADVVTTTTHKSLRGPRGAMIFFRKGLKEINKQGKE-VMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQARTP 350

[Close]

BLAST of GR912130 vs. TAIR peptide
Match: AT5G26780.1 (| Symbols: SHM2 | serine hydroxymethyltransferase 2 | chr5:9418299-9421725 FORWARD LENGTH=517)

HSP 1 Score: 88.1965 bits (217), Expect = 1.139e-18
Identity = 45/76 (59.21%), Postives = 50/76 (65.79%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            Y D  +TTTHKSLRGPR  MIF+R           E  +YD+ED+IN AVFP LQGGPHNH I  LAVA  QA TP
Sbjct:  276 YADVVTTTTHKSLRGPRGAMIFFRKGLKEINKQGKE-VMYDYEDRINQAVFPGLQGGPHNHTITGLAVALKQARTP 350

[Close]

BLAST of GR912130 vs. TAIR peptide
Match: AT1G36370.1 (| Symbols: SHM7 | serine hydroxymethyltransferase 7 | chr1:13696240-13698576 REVERSE LENGTH=598)

HSP 1 Score: 86.6557 bits (213), Expect = 3.314e-18
Identity = 43/81 (53.09%), Postives = 51/81 (62.96%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAV-----YDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            +CD  ++TTHK LRGPR G+IFYR            +       YD E+KINFAVFPSLQGGPHN+ I ALA+A  Q  TP
Sbjct:  360 HCDIVTSTTHKGLRGPRGGIIFYRRGPKIRKQGHHSSHCDTSTHYDLEEKINFAVFPSLQGGPHNNHIAALAIALKQVATP 440

[Close]

BLAST of GR912130 vs. TAIR peptide
Match: AT4G32520.2 (| Symbols: SHM3 | serine hydroxymethyltransferase 3 | chr4:15689642-15692334 REVERSE LENGTH=529)

HSP 1 Score: 81.6481 bits (200), Expect = 1.066e-16
Identity = 43/76 (56.58%), Postives = 47/76 (61.84%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            YCD  +TTTHKSLRGPR GMIF+R            N V D E  +N AVFP LQGGPHNH IG LAV    A +P
Sbjct:  304 YCDIVTTTTHKSLRGPRGGMIFFRKDPI--------NGV-DLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSP 370

[Close]

BLAST of GR912130 vs. TAIR peptide
Match: AT4G32520.1 (| Symbols: SHM3, AtSHMT3 | serine hydroxymethyltransferase 3 | chr4:15689642-15692334 REVERSE LENGTH=529)

HSP 1 Score: 81.6481 bits (200), Expect = 1.066e-16
Identity = 43/76 (56.58%), Postives = 47/76 (61.84%), Query Frame = 3

Query:   24 YCDFPSTTTHKSLRGPRAGMIFYRXXXXXXXXXXXENAVYDFEDKINFAVFPSLQGGPHNHQIGALAVAFIQATTP 251
            YCD  +TTTHKSLRGPR GMIF+R            N V D E  +N AVFP LQGGPHNH IG LAV    A +P
Sbjct:  304 YCDIVTTTTHKSLRGPRGGMIFFRKDPI--------NGV-DLESAVNNAVFPGLQGGPHNHTIGGLAVCLKHAQSP 370

The following BLAST results are available for this feature:

BLAST of GR912130 vs. SwissProt
BLAST of GR912130 vs. TrEMBL
BLAST of GR912130 vs. TAIR peptide

BLAST of GR912130 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 10


Match Name	E-value	Identity	Description
GLYM_SOLTU	7.453e-19	63.16	Serine hydroxymethyltransferase, mitochondrial OS=...	[more]
GLYM_RABIT	7.453e-19	57.14	Serine hydroxymethyltransferase, mitochondrial OS=...	[more]
GLYM_HUMAN	9.734e-19	57.14	Serine hydroxymethyltransferase, mitochondrial OS=...	[more]
GLYM_BOVIN	9.734e-19	57.14	Serine hydroxymethyltransferase, mitochondrial OS=...	[more]
GLYC_NEUCR	1.660e-18	57.89	Serine hydroxymethyltransferase, cytosolic OS=Neur...	[more]
GLYM_PEA	2.169e-18	61.84	Serine hydroxymethyltransferase, mitochondrial OS=...	[more]
GLYC_ASHGO	2.169e-18	57.89	Serine hydroxymethyltransferase, cytosolic OS=Ashb...	[more]
GLYM_ARATH	3.699e-18	62.67	Serine hydroxymethyltransferase, mitochondrial OS=...	[more]
GLYN_FLAPR	8.241e-18	61.33	Serine hydroxymethyltransferase 2, mitochondrial O...	[more]
GLYM_FLAPR	1.406e-17	61.33	Serine hydroxymethyltransferase 1, mitochondrial O...	[more]

BLAST of GR912130 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6ZJY7_SOYBN	1.402e-26	76.62	Serine hydroxymethyltransferase OS=Glycine max PE=...	[more]
C6ZJY6_SOYBN	1.402e-26	76.62	Serine hydroxymethyltransferase OS=Glycine max PE=...	[more]
C6THM7_SOYBN	1.402e-26	76.62	Serine hydroxymethyltransferase OS=Glycine max PE=...	[more]
A9P855_POPTR	1.832e-26	76.62	Serine hydroxymethyltransferase OS=Populus trichoc...	[more]
A9PL04_POPTM	2.392e-26	75.32	Serine hydroxymethyltransferase OS=Populus tremulo...	[more]
Q9FPJ3_ARATH	6.960e-26	75.32	Serine hydroxymethyltransferase OS=Arabidopsis tha...	[more]
Q8LBY1_ARATH	6.960e-26	75.32	Serine hydroxymethyltransferase OS=Arabidopsis tha...	[more]
O23254_ARATH	6.960e-26	75.32	Serine hydroxymethyltransferase OS=Arabidopsis tha...	[more]
D7MHA0_ARALY	6.960e-26	75.32	Putative uncharacterized protein OS=Arabidopsis ly...	[more]
B9N0U0_POPTR	6.960e-26	75.32	Serine hydroxymethyltransferase OS=Populus trichoc...	[more]

BLAST of GR912130 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 10


Match Name	E-value	Identity	Description
AT4G13930.1	2.705e-28	75.32	\| Symbols: SHM4 \| serine hydroxymethyltransferase ...	[more]
AT4G13890.1	3.202e-21	61.84	\| Symbols: SHM5, EDA36, EDA37 \| Pyridoxal phosphat...	[more]
AT1G22020.1	7.888e-20	55.56	\| Symbols: SHM6 \| serine hydroxymethyltransferase ...	[more]
AT4G37930.1	2.997e-19	62.67	\| Symbols: SHM1, STM, SHMT1 \| serine transhydroxym...	[more]
AT5G26780.2	1.139e-18	59.21	\| Symbols: SHM2 \| serine hydroxymethyltransferase ...	[more]
AT5G26780.3	1.139e-18	59.21	\| Symbols: SHM2 \| serine hydroxymethyltransferase ...	[more]
AT5G26780.1	1.139e-18	59.21	\| Symbols: SHM2 \| serine hydroxymethyltransferase ...	[more]
AT1G36370.1	3.314e-18	53.09	\| Symbols: SHM7 \| serine hydroxymethyltransferase ...	[more]
AT4G32520.2	1.066e-16	56.58	\| Symbols: SHM3 \| serine hydroxymethyltransferase ...	[more]
AT4G32520.1	1.066e-16	56.58	\| Symbols: SHM3, AtSHMT3 \| serine hydroxymethyltra...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 33..56 score
None	No IPR available	SEG	seg	seg	coord: 32..42 score
None	No IPR available	SEG	seg	seg	coord: 42..53 score
IPR001085	Serine hydroxymethyltransferase	PANTHER	PTHR11680	SERINE HYDROXYMETHYLTRANSFERASE	coord: 8..83 score: 4.7
IPR001085	Serine hydroxymethyltransferase	PFAM	PF00464	SHMT	coord: 7..83 score: 2.3
IPR015421	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	GENE3D	3.40.640.10	no description	coord: 8..83 score: 2.6
IPR015424	Pyridoxal phosphate-dependent transferase, major domain	SUPERFAMILY	53383	PLP-dependent transferases	coord: 7..84 score: 2.1
IPR019798	Serine hydroxymethyltransferase, pyridoxal phosphate binding site	PROSITE	PS00096	SHMT	coord: 10..26 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR912130 ID=GR912130; Name=GR912130; organism=Cicer arietinum; type=EST; length=254bp
GATTAGCGTGGTCGCGGCCGAGGTACTGTGATTTTCCCTCAACAACAACC
CACAAGAGCTTAAGGGGCCCCAGGGCTGGTATGATCTTCTACCGGAAGGG
ACCTAAGCCACCCAAGAAGGGTCAGCCCGAGAATGCAGTTTATGATTTTG
AAGACAAAATCAACTTTGCTGTTTTCCCCTCCCTTCAGGGTGGTCCTCAC
AACCACCAGATTGGTGCCCTTGCTGTTGCTTTTATTCAGGCCACGACGCC
CGGA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0004372	glycine hydroxymethyltransferase activity
GO:0003824	catalytic activity
GO:0030170	pyridoxal phosphate binding

Vocabulary: **Biological Process**
Term	Definition
GO:0006544	glycine metabolic process
GO:0006563	L-serine metabolic process

Vocabulary: **INTERPRO**
Term	Definition
IPR001085	Ser_HO-MeTrfase
IPR015421	PyrdxlP-dep_Trfase_major
IPR015424	PyrdxlP-dep_Trfase
IPR019798	Ser_HO-MeTrfase_PLP_BS

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