GR917281

EST Overview


Name	GR917281
Unique Name	GR917281
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	321

Libraries


Library Name	Type
LIBEST_024969 Early immune responsive suppression subtracted cDNA libraries of Chickpea (Cicer arietinum cv. WR-315) wilt	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR917281 vs. SwissProt
Match: R10A3_ARATH (60S ribosomal protein L10a-3 OS=Arabidopsis thaliana GN=RPL10AC PE=2 SV=1)

HSP 1 Score: 56.225 bits (134), Expect = 5.903e-8
Identity = 30/55 (54.55%), Postives = 33/55 (60.00%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP VPRP + +C LG A  V EAE IGL+ MDVE
Sbjct:   34 LQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQHVEEAEKIGLESMDVE 88

[Close]

BLAST of GR917281 vs. SwissProt
Match: R10A1_ARATH (60S ribosomal protein L10a-1 OS=Arabidopsis thaliana GN=RPL10AA PE=2 SV=1)

HSP 1 Score: 54.299 bits (129), Expect = 2.243e-7
Identity = 28/55 (50.91%), Postives = 33/55 (60.00%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + +C LG A  V EAE +GL+ MDVE
Sbjct:   33 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLENMDVE 87

[Close]

BLAST of GR917281 vs. SwissProt
Match: R10A2_ARATH (60S ribosomal protein L10a-2 OS=Arabidopsis thaliana GN=RPL10AB PE=2 SV=1)

HSP 1 Score: 53.5286 bits (127), Expect = 3.826e-7
Identity = 28/55 (50.91%), Postives = 32/55 (58.18%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + +C LG A  V EAE +GL  MDVE
Sbjct:   33 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLSNMDVE 87

[Close]

BLAST of GR917281 vs. TrEMBL
Match: C6SVS9_SOYBN (Ribosomal protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 62.7734 bits (151), Expect = 1.302e-8
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + +C LG A  V EAE IGLDWMDVE
Sbjct:   33 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKIGLDWMDVE 87

[Close]

BLAST of GR917281 vs. TrEMBL
Match: A9PDC6_POPTR (Ribosomal protein OS=Populus trichocarpa GN=POPTRDRAFT_741795 PE=2 SV=1)

HSP 1 Score: 61.2326 bits (147), Expect = 3.787e-8
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + VC LG A  V EAE+IGL WMDVE
Sbjct:   33 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAESIGLQWMDVE 87

[Close]

BLAST of GR917281 vs. TrEMBL
Match: Q6ZJ04_ORYSJ (Ribosomal protein OS=Oryza sativa subsp. japonica GN=OJ1150_A11.31 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.102e-7
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + VC LG A  V EAE IGLD+MDVE
Sbjct:   33 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVE 87

[Close]

BLAST of GR917281 vs. TrEMBL
Match: B9SCT8_RICCO (60S ribosomal protein L10a, putative OS=Ricinus communis GN=RCOM_1281610 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.102e-7
Identity = 30/55 (54.55%), Postives = 33/55 (60.00%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + +C LG A  V EAE IGL WMDVE
Sbjct:   40 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEAIGLQWMDVE 94

[Close]

BLAST of GR917281 vs. TrEMBL
Match: B9SCT6_RICCO (60S ribosomal protein L10a, putative OS=Ricinus communis GN=RCOM_1281590 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.102e-7
Identity = 30/55 (54.55%), Postives = 33/55 (60.00%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + +C LG A  V EAE IGL WMDVE
Sbjct:   43 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEAIGLQWMDVE 97

[Close]

BLAST of GR917281 vs. TrEMBL
Match: B9FYJ0_ORYSJ (Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_28264 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.102e-7
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + VC LG A  V EAE IGLD+MDVE
Sbjct:   53 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVE 107

[Close]

BLAST of GR917281 vs. TrEMBL
Match: B8B9N6_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_30253 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.102e-7
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + VC LG A  V EAE IGLD+MDVE
Sbjct:  139 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVE 193

HSP 2 Score: 56.6102 bits (135), Expect = 9.328e-7
Identity = 30/55 (54.55%), Postives = 33/55 (60.00%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV L  +PRP + VC LG A  V EAE IGLD+MDVE
Sbjct:  330 LQIGLKNYDPQKDKRFSGSVKLSHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVE 384

[Close]

BLAST of GR917281 vs. TrEMBL
Match: B8B9K6_ORYSI (Ribosomal protein OS=Oryza sativa subsp. indica GN=OsI_30261 PE=3 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.102e-7
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + VC LG A  V EAE IGLD+MDVE
Sbjct:   33 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVE 87

[Close]

BLAST of GR917281 vs. TrEMBL
Match: B7F845_ORYSJ (Ribosomal protein OS=Oryza sativa subsp. japonica GN=OsJ_28271 PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.102e-7
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + VC LG A  V EAE IGLD+MDVE
Sbjct:   33 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVE 87

[Close]

BLAST of GR917281 vs. TrEMBL
Match: B3TLQ8_ELAGV (Ribosomal protein OS=Elaeis guineensis var. tenera PE=2 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 1.102e-7
Identity = 31/55 (56.36%), Postives = 34/55 (61.82%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + VC LG A  V EAE IGLD+MDVE
Sbjct:   33 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEAEKIGLDYMDVE 87

[Close]

BLAST of GR917281 vs. TAIR peptide
Match: AT5G22440.2 (| Symbols: | Ribosomal protein L1p/L10e family | chr5:7435328-7436486 REVERSE LENGTH=217)

HSP 1 Score: 56.225 bits (134), Expect = 4.668e-9
Identity = 30/55 (54.55%), Postives = 33/55 (60.00%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP VPRP + +C LG A  V EAE IGL+ MDVE
Sbjct:   34 LQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQHVEEAEKIGLESMDVE 88

[Close]

BLAST of GR917281 vs. TAIR peptide
Match: AT5G22440.1 (| Symbols: | Ribosomal protein L1p/L10e family | chr5:7435328-7436486 REVERSE LENGTH=217)

HSP 1 Score: 56.225 bits (134), Expect = 4.668e-9
Identity = 30/55 (54.55%), Postives = 33/55 (60.00%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP VPRP + +C LG A  V EAE IGL+ MDVE
Sbjct:   34 LQIGLKNYDPQKDKRFSGSVKLPHVPRPKMKICMLGDAQHVEEAEKIGLESMDVE 88

[Close]

BLAST of GR917281 vs. TAIR peptide
Match: AT1G08360.1 (| Symbols: | Ribosomal protein L1p/L10e family | chr1:2636231-2637694 FORWARD LENGTH=216)

HSP 1 Score: 54.299 bits (129), Expect = 1.774e-8
Identity = 28/55 (50.91%), Postives = 33/55 (60.00%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + +C LG A  V EAE +GL+ MDVE
Sbjct:   33 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLENMDVE 87

[Close]

BLAST of GR917281 vs. TAIR peptide
Match: AT2G27530.2 (| Symbols: PGY1 | Ribosomal protein L1p/L10e family | chr2:11763443-11764570 REVERSE LENGTH=216)

HSP 1 Score: 53.5286 bits (127), Expect = 3.026e-8
Identity = 28/55 (50.91%), Postives = 32/55 (58.18%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + +C LG A  V EAE +GL  MDVE
Sbjct:   33 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLSNMDVE 87

[Close]

BLAST of GR917281 vs. TAIR peptide
Match: AT2G27530.1 (| Symbols: PGY1 | Ribosomal protein L1p/L10e family | chr2:11763443-11764570 REVERSE LENGTH=216)

HSP 1 Score: 53.5286 bits (127), Expect = 3.026e-8
Identity = 28/55 (50.91%), Postives = 32/55 (58.18%), Query Frame = 3

Query:   81 LPXGLSCCGPXXGXRFCGSVXLPXVPRPXLXVCXLGXALPVVEAENIGLDWMDVE 245
            L  GL    P    RF GSV LP +PRP + +C LG A  V EAE +GL  MDVE
Sbjct:   33 LQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKICMLGDAQHVEEAEKMGLSNMDVE 87

The following BLAST results are available for this feature:

BLAST of GR917281 vs. SwissProt
BLAST of GR917281 vs. TrEMBL
BLAST of GR917281 vs. TAIR peptide

BLAST of GR917281 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 3


Match Name	E-value	Identity	Description
R10A3_ARATH	5.903e-8	54.55	60S ribosomal protein L10a-3 OS=Arabidopsis thalia...	[more]
R10A1_ARATH	2.243e-7	50.91	60S ribosomal protein L10a-1 OS=Arabidopsis thalia...	[more]
R10A2_ARATH	3.826e-7	50.91	60S ribosomal protein L10a-2 OS=Arabidopsis thalia...	[more]

BLAST of GR917281 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6SVS9_SOYBN	1.302e-8	56.36	Ribosomal protein OS=Glycine max PE=2 SV=1	[more]
A9PDC6_POPTR	3.787e-8	56.36	Ribosomal protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q6ZJ04_ORYSJ	1.102e-7	56.36	Ribosomal protein OS=Oryza sativa subsp. japonica ...	[more]
B9SCT8_RICCO	1.102e-7	54.55	60S ribosomal protein L10a, putative OS=Ricinus co...	[more]
B9SCT6_RICCO	1.102e-7	54.55	60S ribosomal protein L10a, putative OS=Ricinus co...	[more]
B9FYJ0_ORYSJ	1.102e-7	56.36	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8B9N6_ORYSI	1.102e-7	56.36	Putative uncharacterized protein OS=Oryza sativa s...	[more]
B8B9K6_ORYSI	1.102e-7	56.36	Ribosomal protein OS=Oryza sativa subsp. indica GN...	[more]
B7F845_ORYSJ	1.102e-7	56.36	Ribosomal protein OS=Oryza sativa subsp. japonica ...	[more]
B3TLQ8_ELAGV	1.102e-7	56.36	Ribosomal protein OS=Elaeis guineensis var. tenera...	[more]

BLAST of GR917281 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT5G22440.2	4.668e-9	54.55	\| Symbols: \| Ribosomal protein L1p/L10e family \| ...	[more]
AT5G22440.1	4.668e-9	54.55	\| Symbols: \| Ribosomal protein L1p/L10e family \| ...	[more]
AT1G08360.1	1.774e-8	50.91	\| Symbols: \| Ribosomal protein L1p/L10e family \| ...	[more]
AT2G27530.2	3.026e-8	50.91	\| Symbols: PGY1 \| Ribosomal protein L1p/L10e famil...	[more]
AT2G27530.1	3.026e-8	50.91	\| Symbols: PGY1 \| Ribosomal protein L1p/L10e famil...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 16..54 score
None	No IPR available	SEG	seg	seg	coord: 2..21 score: NAcoord: 25..38 score: NAcoord: 47..66 score
None	No IPR available	PANTHER	PTHR23105	RIBOSOMAL PROTEIN L7AE FAMILY MEMBER	coord: 41..100 score: 2.2
None	No IPR available	PANTHER	PTHR23105:SF4	60S RIBOSOMAL PROTEIN L10A	coord: 41..100 score: 2.2
None	No IPR available	SEG	seg	seg	coord: 1..44 score: NAcoord: 46..61 score: NAcoord: 82..99 score
None	No IPR available	SEG	seg	seg	coord: 46..60 score: NAcoord: 83..104 score
None	No IPR available	SEG	seg	seg	coord: 8..28 score: NAcoord: 49..61 score: NAcoord: 63..82 score: NAcoord: 91..106 score
None	No IPR available	SEG	seg	seg	coord: 33..62 score
IPR002143	Ribosomal protein L1	SUPERFAMILY	56808	Ribosomal protein L1	coord: 41..100 score: 1.2
IPR016095	Ribosomal protein L1, 3-layer alpha/beta-sandwich	GENE3D	3.40.50.790	no description	coord: 57..100 score: 5.7

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR917281 ID=GR917281; Name=GR917281; organism=Cicer arietinum; type=EST; length=321bp
GTGGTGCTTTGTGNGTTGCCGTCTCGGGGGTCGCGGCTGTTTCCTTGGTG
TTTNNCTGGTCTTTTGTGGTGTCTCTTGGNCTCCCGNTTGGTCTNTCGTG
CTGTGGTCCTCNNNCGGGTNNGCGTTTCTGTGGTTCTGTTNNNTTGCCTC
NCGTTCCTCGTCCCNNGCTGGNGGTCTGTNTGCTTGGGGNCGCTCTTCCT
GTTGTGGAGGCAGAGAATATAGGATTGGACTGGATGGATGTTGAAGCTTT
GAAGAAGCTAAACAAAAATAAGAAATTGGTGAAGAAACTTGCAAAGAAGT
ACCTCGGCCGCGACCACGCTA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003723	RNA binding
GO:0003735	structural constituent of ribosome

Vocabulary: **Biological Process**
Term	Definition
GO:0006396	RNA processing
GO:0006412	translation

Vocabulary: **Cellular Component**
Term	Definition
GO:0005622	intracellular anatomical structure
GO:0005840	ribosome

Vocabulary: **INTERPRO**
Term	Definition
IPR002143	Ribosomal_uL1
IPR016095	Ribosomal_uL1_3-a/b-sand

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