GR392593

EST Overview


Name	GR392593
Unique Name	GR392593
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	763

Libraries


Library Name	Type
LIBEST_024778 ICC1882 field drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
KEGG analysis for Cicer arietinum unigene v1	2011-01-05
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR392593 vs. SwissProt
Match: T2FB_SCHPO (Transcription initiation factor IIF subunit beta OS=Schizosaccharomyces pombe GN=tfg2 PE=1 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.198e-9
Identity = 38/102 (37.25%), Postives = 50/102 (49.02%), Query Frame = 2

Query:   14 PGMLGLISSSSKDKKRT-QPVKQXXXXXXXXXXGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTGAE 316
            PG LG  S S+    R  +P              EL DI+FK FE    W LK L +   QP  +LKE+L+ + + NKRG     Y LKPEYK +++    E
Sbjct:  161 PGTLGSRSRSTTSFIRNVKPRTGEGLKNSRIPRNELLDILFKCFEDYEYWTLKGLREYVKQPEVYLKEVLDSIAILNKRGPYALKYSLKPEYKGTMDAASVE 262

[Close]

BLAST of GR392593 vs. SwissProt
Match: T2FB_XENLA (General transcription factor IIF subunit 2 OS=Xenopus laevis GN=gtf2f2 PE=2 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.587e-8
Identity = 25/56 (44.64%), Postives = 39/56 (69.64%), Query Frame = 2

Query:  122 DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYK 289
            D++F  FE+   + +K LV  T QP  +LKEIL ++ +YN +G ++ T+ELKPEY+
Sbjct:  200 DMLFSAFEKHQYYNIKDLVDITKQPVTYLKEILRDIGIYNMKGTHKNTWELKPEYR 255

[Close]

BLAST of GR392593 vs. SwissProt
Match: T2FB_HUMAN (General transcription factor IIF subunit 2 OS=Homo sapiens GN=GTF2F2 PE=1 SV=2)

HSP 1 Score: 58.151 bits (139), Expect = 6.031e-8
Identity = 27/56 (48.21%), Postives = 38/56 (67.86%), Query Frame = 2

Query:  122 DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYK 289
            D++F  FE+   + LK LV  T QP  +LKEIL E+ V N +G ++ T+ELKPEY+
Sbjct:  185 DMLFSAFEKHQYYNLKDLVDITKQPVVYLKEILKEIGVQNVKGIHKNTWELKPEYR 240

[Close]

BLAST of GR392593 vs. SwissProt
Match: T2FB_RAT (General transcription factor IIF subunit 2 OS=Rattus norvegicus GN=Gtf2f2 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 7.876e-8
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 2

Query:  122 DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYK 289
            D++F  FE+   + LK LV  T QP  +LKEIL E+ + N +G ++ T+ELKPEY+
Sbjct:  185 DMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240

[Close]

BLAST of GR392593 vs. SwissProt
Match: T2FB_MOUSE (General transcription factor IIF subunit 2 OS=Mus musculus GN=Gtf2f2 PE=1 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 7.876e-8
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 2

Query:  122 DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYK 289
            D++F  FE+   + LK LV  T QP  +LKEIL E+ + N +G ++ T+ELKPEY+
Sbjct:  185 DMLFSAFEKHQYYNLKDLVDITKQPVGYLKEILKEIGIQNVKGIHKNTWELKPEYR 240

[Close]

BLAST of GR392593 vs. SwissProt
Match: T2FB_BOVIN (General transcription factor IIF subunit 2 OS=Bos taurus GN=GTF2F2 PE=2 SV=1)

HSP 1 Score: 57.7658 bits (138), Expect = 7.876e-8
Identity = 26/56 (46.43%), Postives = 38/56 (67.86%), Query Frame = 2

Query:  122 DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYK 289
            D++F  FE+   + LK LV  T QP  +LK+IL E+ V N +G ++ T+ELKPEY+
Sbjct:  185 DMLFSAFEKHQYYNLKDLVDITKQPVSYLKDILKEIGVQNVKGIHKNTWELKPEYR 240

[Close]

BLAST of GR392593 vs. SwissProt
Match: T2FB_YEAST (Transcription initiation factor IIF subunit beta OS=Saccharomyces cerevisiae GN=TFG2 PE=1 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 6.668e-7
Identity = 27/64 (42.19%), Postives = 38/64 (59.38%), Query Frame = 2

Query:  113 ELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVED 304
            E+ D +FKLF+    W+LK L + T QP   LKE L+++    K+G     Y L+PEYKK  E+
Sbjct:  298 EILDYLFKLFDEYDYWSLKGLKERTRQPEAHLKECLDKVATLVKKGPYAFKYTLRPEYKKLKEE 361

[Close]

BLAST of GR392593 vs. SwissProt
Match: T2FB_DROME (General transcription factor IIF subunit 2 OS=Drosophila melanogaster GN=TfIIFbeta PE=2 SV=2)

HSP 1 Score: 54.6842 bits (130), Expect = 6.668e-7
Identity = 23/56 (41.07%), Postives = 38/56 (67.86%), Query Frame = 2

Query:  122 DIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYK 289
            D++F  FE+   + +K LV+ T+QP  +LKEIL ++C YN +  ++  +ELK EY+
Sbjct:  202 DMLFHAFEKHQYYNIKDLVKITNQPISYLKEILKDVCDYNMKNPHKNMWELKKEYR 257

[Close]

BLAST of GR392593 vs. TrEMBL
Match: C6TL77_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 185.267 bits (469), Expect = 4.943e-45
Identity = 90/105 (85.71%), Postives = 94/105 (89.52%), Query Frame = 2

Query:    2 MRPMPGMLGLISSSSKDKKRTQPVKQXXXXXXXXXXGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTGAE 316
            MRPMPGM+GL+SS+SKDKK+TQPVKQ          GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDT AE
Sbjct:  158 MRPMPGMIGLVSSNSKDKKKTQPVKQSDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTSAE 262

[Close]

BLAST of GR392593 vs. TrEMBL
Match: A9P7Y3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_652001 PE=2 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 1.438e-44
Identity = 90/105 (85.71%), Postives = 93/105 (88.57%), Query Frame = 2

Query:    2 MRPMPGMLGLISSSSKDKKRTQPVKQXXXXXXXXXXGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTGAE 316
            MRPMPGM+GLISSSSKDKKR QPVKQ          GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG NQGTYELKPEYKK+VEDTGA+
Sbjct:  157 MRPMPGMVGLISSSSKDKKRPQPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKTVEDTGAD 261

[Close]

BLAST of GR392593 vs. TrEMBL
Match: B9GRH3_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_830044 PE=4 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 4.185e-44
Identity = 88/105 (83.81%), Postives = 93/105 (88.57%), Query Frame = 2

Query:    2 MRPMPGMLGLISSSSKDKKRTQPVKQXXXXXXXXXXGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTGAE 316
            MRPMPGM+GLISS+SKDKK+TQPVKQ          GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG NQGTYELKPEYKK+ EDTGA+
Sbjct:  161 MRPMPGMVGLISSTSKDKKKTQPVKQSDVKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKTAEDTGAD 265

[Close]

BLAST of GR392593 vs. TrEMBL
Match: B7FM96_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 5.466e-44
Identity = 89/105 (84.76%), Postives = 92/105 (87.62%), Query Frame = 2

Query:    2 MRPMPGMLGLISSSSKDKKRTQPVKQXXXXXXXXXXGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTGAE 316
            MRPMPGM+GL+SS+ KDKKRTQPVKQ          GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVED  AE
Sbjct:  158 MRPMPGMVGLVSSNFKDKKRTQPVKQTDTKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDANAE 262

[Close]

BLAST of GR392593 vs. TrEMBL
Match: B9R825_RICCO (Transcription initiation factor IIF subunit beta, putative OS=Ricinus communis GN=RCOM_1596190 PE=4 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 1.218e-43
Identity = 88/105 (83.81%), Postives = 91/105 (86.67%), Query Frame = 2

Query:    2 MRPMPGMLGLISSSSKDKKRTQPVKQXXXXXXXXXXGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTGAE 316
            MRPMPGM+GLISSSSKDKK+T PVKQ          GELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRG NQGTYELKPEYKKS EDTG +
Sbjct:  153 MRPMPGMVGLISSSSKDKKKTAPVKQSDMKRTRRDRGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGTNQGTYELKPEYKKSAEDTGGD 257

[Close]

BLAST of GR392593 vs. TrEMBL
Match: Q9LQZ4_ARATH (At1g75700 OS=Arabidopsis thaliana GN=At1g75700/F1B16.4 PE=2 SV=1)

HSP 1 Score: 163.696 bits (413), Expect = 1.540e-38
Identity = 81/106 (76.42%), Postives = 88/106 (83.02%), Query Frame = 2

Query:    2 MRPMPGMLGLISSSSKDKKRTQPVKQXXXXXXXXXXGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVE-DTGAE 316
            MRPMPGMLGL+SS+SK+K++  PVKQ          GELE IMFKLFE QPNW LKQLVQETDQPAQFLKEILNELCVYNKRG+NQGTYELKPEYKKS E DTG +
Sbjct:  156 MRPMPGMLGLVSSNSKEKRKPPPVKQTEVKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNELCVYNKRGSNQGTYELKPEYKKSAEDDTGGQ 261

[Close]

BLAST of GR392593 vs. TrEMBL
Match: D7KSQ3_ARALY (Predicted protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_677106 PE=4 SV=1)

HSP 1 Score: 163.31 bits (412), Expect = 2.012e-38
Identity = 79/101 (78.22%), Postives = 85/101 (84.16%), Query Frame = 2

Query:    2 MRPMPGMLGLISSSSKDKKRTQPVKQXXXXXXXXXXGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVED 304
            MRPMPGMLGL+SS+SK+K++  PVKQ          GELE IMFKLFE QPNW LKQLVQETDQPAQFLKEILNELCVYNKRG+NQGTYELKPEYKKS ED
Sbjct:  155 MRPMPGMLGLVSSNSKEKRKPPPVKQTEVKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNELCVYNKRGSNQGTYELKPEYKKSAED 255

[Close]

BLAST of GR392593 vs. TrEMBL
Match: C0PJX8_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.057e-35
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 2

Query:    2 MRPMPGMLGLISSSSKDKKRTQPVKQXXXXXXXXXXGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDT 307
            MRPMPG++GLISSSSK+KK+  PVK            E+E+++FKLFERQPNWALK LVQETDQP QFLKEILN+LCVYNKRG NQGT+ELKPEYKKS  DT
Sbjct:    3 MRPMPGIVGLISSSSKEKKKQAPVKPSDAKRTRRDRTEMENVIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCVYNKRGPNQGTHELKPEYKKSTGDT 104

[Close]

BLAST of GR392593 vs. TrEMBL
Match: B4FKC9_MAIZE (Putative uncharacterized protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 6.057e-35
Identity = 73/102 (71.57%), Postives = 83/102 (81.37%), Query Frame = 2

Query:    2 MRPMPGMLGLISSSSKDKKRTQPVKQXXXXXXXXXXGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDT 307
            MRPMPG++GLISSSSK+KK+  PVK            E+E+++FKLFERQPNWALK LVQETDQP QFLKEILN+LCVYNKRG NQGT+ELKPEYKKS  DT
Sbjct:  168 MRPMPGIVGLISSSSKEKKKQAPVKPSDAKRTRRDRTEMENVIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCVYNKRGPNQGTHELKPEYKKSTGDT 269

[Close]

BLAST of GR392593 vs. TrEMBL
Match: B6TIE2_MAIZE (ATP binding protein OS=Zea mays PE=2 SV=1)

HSP 1 Score: 148.673 bits (374), Expect = 5.128e-34
Identity = 72/104 (69.23%), Postives = 81/104 (77.88%), Query Frame = 2

Query:    2 MRPMPGMLGLISSSSKDKKRTQPVKQXXXXXXXXXXGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVEDTGA 313
            MRPMPG++GLI S SK+KK+  P K            E+E+I+FKLFERQPNWALK LVQETDQP QFLKEILN+LCVYNKRG NQGT+ELKPEYKKS  DT A
Sbjct:  165 MRPMPGLVGLIPSGSKEKKKQAPAKPSDVKRTRRDRTEMENIIFKLFERQPNWALKALVQETDQPEQFLKEILNDLCVYNKRGPNQGTHELKPEYKKSTGDTDA 268

[Close]

BLAST of GR392593 vs. TAIR peptide
Match: AT1G75510.1 (| Symbols: | Transcription initiation factor IIF, beta subunit | chr1:28347254-28348629 REVERSE LENGTH=261)

HSP 1 Score: 163.696 bits (413), Expect = 1.008e-40
Identity = 81/106 (76.42%), Postives = 88/106 (83.02%), Query Frame = 2

Query:    2 MRPMPGMLGLISSSSKDKKRTQPVKQXXXXXXXXXXGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVE-DTGAE 316
            MRPMPGMLGL+SS+SK+K++  PVKQ          GELE IMFKLFE QPNW LKQLVQETDQPAQFLKEILNELCVYNKRG+NQGTYELKPEYKKS E DTG +
Sbjct:  156 MRPMPGMLGLVSSNSKEKRKPPPVKQTEVKRTRRDRGELEAIMFKLFEGQPNWTLKQLVQETDQPAQFLKEILNELCVYNKRGSNQGTYELKPEYKKSAEDDTGGQ 261

[Close]

BLAST of GR392593 vs. TAIR peptide
Match: AT3G52270.1 (| Symbols: | Transcription initiation factor IIF, beta subunit | chr3:19387180-19388902 REVERSE LENGTH=269)

HSP 1 Score: 113.235 bits (282), Expect = 1.563e-25
Identity = 54/103 (52.43%), Postives = 73/103 (70.87%), Query Frame = 2

Query:    2 MRPMPGMLGLISSSSKDK--KRTQPVKQXXXXXXXXXXGELEDIMFKLFERQPNWALKQLVQETDQPAQFLKEILNELCVYNKRGANQGTYELKPEYKKSVED 304
            MRPMPGM+   ++  K K   RT  +K+           E+E++MF LFERQ NW L+ L+QETDQP QFLK++L +LC+YN +G+NQGTYELKPEYKK+ ++
Sbjct:  172 MRPMPGMIIPTAAPEKKKLTNRTSEMKRTRRDRR-----EMEEVMFNLFERQSNWTLRLLIQETDQPEQFLKDLLKDLCIYNNKGSNQGTYELKPEYKKATQE 269

The following BLAST results are available for this feature:

BLAST of GR392593 vs. SwissProt
BLAST of GR392593 vs. TrEMBL
BLAST of GR392593 vs. TAIR peptide

BLAST of GR392593 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 8


Match Name	E-value	Identity	Description
T2FB_SCHPO	3.198e-9	37.25	Transcription initiation factor IIF subunit beta O...	[more]
T2FB_XENLA	1.587e-8	44.64	General transcription factor IIF subunit 2 OS=Xeno...	[more]
T2FB_HUMAN	6.031e-8	48.21	General transcription factor IIF subunit 2 OS=Homo...	[more]
T2FB_RAT	7.876e-8	46.43	General transcription factor IIF subunit 2 OS=Ratt...	[more]
T2FB_MOUSE	7.876e-8	46.43	General transcription factor IIF subunit 2 OS=Mus ...	[more]
T2FB_BOVIN	7.876e-8	46.43	General transcription factor IIF subunit 2 OS=Bos ...	[more]
T2FB_YEAST	6.668e-7	42.19	Transcription initiation factor IIF subunit beta O...	[more]
T2FB_DROME	6.668e-7	41.07	General transcription factor IIF subunit 2 OS=Dros...	[more]

BLAST of GR392593 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
C6TL77_SOYBN	4.943e-45	85.71	Putative uncharacterized protein OS=Glycine max PE...	[more]
A9P7Y3_POPTR	1.438e-44	85.71	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B9GRH3_POPTR	4.185e-44	83.81	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
B7FM96_MEDTR	5.466e-44	84.76	Putative uncharacterized protein OS=Medicago trunc...	[more]
B9R825_RICCO	1.218e-43	83.81	Transcription initiation factor IIF subunit beta, ...	[more]
Q9LQZ4_ARATH	1.540e-38	76.42	At1g75700 OS=Arabidopsis thaliana GN=At1g75700/F1B...	[more]
D7KSQ3_ARALY	2.012e-38	78.22	Predicted protein OS=Arabidopsis lyrata subsp. lyr...	[more]
C0PJX8_MAIZE	6.057e-35	71.57	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
B4FKC9_MAIZE	6.057e-35	71.57	Putative uncharacterized protein OS=Zea mays PE=2 ...	[more]
B6TIE2_MAIZE	5.128e-34	69.23	ATP binding protein OS=Zea mays PE=2 SV=1	[more]

BLAST of GR392593 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 2


Match Name	E-value	Identity	Description
AT1G75510.1	1.008e-40	76.42	\| Symbols: \| Transcription initiation factor IIF,...	[more]
AT3G52270.1	1.563e-25	52.43	\| Symbols: \| Transcription initiation factor IIF,...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003196	Transcription initiation factor IIF, beta subunit	PANTHER	PTHR10445	TRANSCRIPTION INITIATION FACTOR IIF (TFIIF), BETA SUBUNIT-RELATED	coord: 1..105 score: 1.5
IPR003196	Transcription initiation factor IIF, beta subunit	PFAM	PF02270	TFIIF_beta	coord: 15..97 score: 7.8
IPR011991	Winged helix-turn-helix transcription repressor DNA-binding	GENE3D	1.10.10.10	no description	coord: 31..97 score: 1.6
None	No IPR available	SEG	seg	seg	coord: 27..36 score
None	No IPR available	SUPERFAMILY	46785	"Winged helix" DNA-binding domain	coord: 31..99 score: 1.4
None	No IPR available	SEG	seg	seg	coord: 15..36 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR392593 ID=GR392593; Name=GR392593; organism=Cicer arietinum; type=EST; length=763bp
AATGAGGCCAATGCCTGGAATGCTTGGTTTAATTTCATCCAGTTCAAAGG
ACAAGAAGAGGACACAGCCAGTCAAACAAACTGATACAAAGAGAACAAGA
AGAGATCGCGGAGAGCTGGAGGATATAATGTTCAAGCTATTTGAAAGACA
GCCTAACTGGGCATTGAAGCAGCTTGTCCAAGAGACTGATCAACCTGCAC
AATTCTTGAAAGAGATATTGAATGAACTGTGTGTATACAATAAAAGAGGC
GCCAATCAAGGAACTTACGAGCTGAAGCCTGAATACAAGAAATCTGTTGA
AGATACAGGCGCTGAATAGTGCTCTGTTCTTTTCATTATACTCTAACTTC
GCAAGTCCTCACTTCAAAAAAAGATTGAAAATCAGTTTCTTTCTTTGTTG
AGAGGATAAGAGTCAGTGTGTTAAGCAAAAAGTTATATATGACAAGTACC
TACAAAATGTTAAACTTATTTATAAGTCCAGGACTCTGAATAATGTTCGA
TTCTTGAATTTTTTTTTACCTATAAAGATGCAGTTATATAAGTCCAGGAC
TTTTGATTAGAAATTTGGATCCTCTCATGTTGGGGGTTATGTTCTCCATC
CTATCATTAATGGTGAAATGGTGAACATAACTCCCTCATGTTTGATTCAA
ACATGAGAGGATCCAAATCCTTTTGAATATATTGACTCCCATAGATAGAG
ATGTTATGTTCTTTATATTCTGTACAGTAACTAATAGTATGTATCGGGCT
TGCTTTAGTTTTA

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Molecular Function**
Term	Definition
GO:0003702	obsolete RNA polymerase II transcription factor activity
GO:0005524	ATP binding

Vocabulary: **Cellular Component**
Term	Definition
GO:0005674	transcription factor TFIIF complex

Vocabulary: **Biological Process**
Term	Definition
GO:0006367	transcription initiation at RNA polymerase II promoter

Vocabulary: **INTERPRO**
Term	Definition
IPR003196	TFIIF_beta
IPR011991	ArsR-like_HTH

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