GR399162

EST Overview


Name	GR399162
Unique Name	GR399162
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	841

Libraries


Library Name	Type
LIBEST_024782 ICC4958 field drought stressed root cDNA library	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of GR399162 vs. TrEMBL
Match: A3FF19_PEA (Phloem specific protein (Fragment) OS=Pisum sativum PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 2.520e-11
Identity = 52/115 (45.22%), Postives = 63/115 (54.78%), Query Frame = -1

Query:  146 VAGVRREPNVLTDVHRDPTVRMPFSRGRVVYEDDAFEAVRSNKGSGHGIXXXXXXXNPEILREKVEVFRYEEDPSQVGYREEVIYEDV----------RRNRPGGLELHKWKTYR 460
            +AGVRREP+VL+D  R P   M F++ RVVY+    E   S++   H         NPEI+ E+VEV  YE  P    Y  EVIYE+           RRNRP GL L KWKTYR
Sbjct:   22 IAGVRREPSVLSDFDRYPNAEMAFNK-RVVYD----EVEGSHRHHHH--------HNPEIV-ERVEVVEYERVPEVRPYGGEVIYEEYMDVETNQYNPRRNRPNGLGLQKWKTYR 122

[Close]

BLAST of GR399162 vs. TrEMBL
Match: Q41666_VICFA (Phloem specific protein OS=Vicia faba PE=2 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.250e-10
Identity = 50/115 (43.48%), Postives = 63/115 (54.78%), Query Frame = -1

Query:  146 VAGVRREPNVLTDVHRDPTVRMPFSRGRVVYEDDAFEAVRSNKGSGHGIXXXXXXXNPEILREKVEVFRYEEDPSQVGYREEVIYEDV----------RRNRPGGLELHKWKTYR 460
            +AGVRREP+VL++  R P   M F++ RVVY+    E   S++   H         NPE++ E+VEV  YE  P    Y  EVIYE+           RRNRP GL L KWKTYR
Sbjct:   42 IAGVRREPSVLSEFDRYPNAEMAFNK-RVVYD----EIEGSHRHHHH--------HNPEVV-ERVEVVEYERVPEVRPYGGEVIYEEYMDVETSQYNPRRNRPNGLGLQKWKTYR 142

The following BLAST results are available for this feature:

BLAST of GR399162 vs. TrEMBL

BLAST of GR399162 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 2


Match Name	E-value	Identity	Description
A3FF19_PEA	2.520e-11	45.22	Phloem specific protein (Fragment) OS=Pisum sativu...	[more]
Q41666_VICFA	1.250e-10	43.48	Phloem specific protein OS=Vicia faba PE=2 SV=1	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 7..20 score
None	No IPR available	SEG	seg	seg	coord: 58..65 score
None	No IPR available	SEG	seg	seg	coord: 66..73 score
None	No IPR available	SEG	seg	seg	coord: 58..65 score

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GR399162 ID=GR399162; Name=GR399162; organism=Cicer arietinum; type=EST; length=841bp
GGAAAAAGATATATATGGGTTATTAATAAGATGGATACCTGATAACGGGT
GGCTAAGCAGGAATTTATTTAATAGAAACACATGAGTGATGTTTTGTTAA
GATATATAGCCCGCCTAGCAAAGTAGCTATAGCAGCTGCTTATGGCCTGT
ATGTCTTCCATTTGTGCAACTCAAGACCGCCTGGTCGGTTCCTTCGAACA
TCTTCGTATATCACTTCTTCACGATATCCTACCTGAGATGGGTCTTCTTC
ATACCTGAACACTTCAACCTTCTCACGGAGGATCTCTGGGTTGTTGTTGT
GGTGGTGGTGGTGGATGCCATGACCAGATCCTTTATTGGATCGAACAGCC
TCGAACGCATCATCCTCATAAACAACCCGCCCTCTGGAGAATGGCATTCG
AACGGTTGGATCACGATGGACATCAGTGAGAACATTTGGTTCTCTTCTGA
CACCTGCAACGGGACTGGAGTCAGTCCACGGGTCTTACCAATTTCTGAGT
ATCCTGTTTAGTCAAAACATAATTTCTGCAACCCGCAGCATACTCCCGTC
TGCTGTGTTGTTTACTGAGAGTTTAACTACAGTCGATTTTCGACCCCTTG
TCAGTTCTCCCACTTGCAGAATTCCTAACCCACCCTAAGCCTCTTTGAAT
TTTAAACATTCGCCCCCTCAGTACCCTTGGTTTAAACACCTTCATTCTCC
ACTCCTGAGGACATTGGTTTACCTCGAAATACCAAAAAAAAACACAACCC
ACTGGTTAATGCTATTCTTGATTCCTACTTATCATCCCACCCCCGTTCTC
CCTTGTTCAACCCCCCTTACCTATCCAAATCCTGACTTCCC

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