HO066424

EST Overview


Name	HO066424
Unique Name	HO066424
Type	EST
Organism	Cicer arietinum (chickpea)
Sequence length	919

Libraries


Library Name	Type
LIBEST_026413 Chickpea drought stressed cDNA SSH library AS2	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Cicer arietinum unigene v1	Cicer arietinum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Cicer arietinum unigene v1	2010-12-27
Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide	2011-02-03
Homology Analysis: Cicer arietinum unigene v1 vs Swissprot	2010-12-28
Homology Analysis: Cicer arietinum unigene v1 vs Trembl	2010-12-28
InterProScan analysis for Cicer arietinum unigene v1	2010-12-29

Homology

[Close]

BLAST of HO066424 vs. SwissProt
Match: PSBR_TOBAC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Nicotiana tabacum GN=PSBR PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 4.021e-23
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            YQFVDKYGANVDGYSPIY   DWS +GDVY GGTTGLAIWAVT          LV+NT
Sbjct:   74 YQFVDKYGANVDGYSPIYNTDDWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVFNT 131

HSP 2 Score: 42.743 bits (99), Expect = 4.021e-23
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = -1

Query:  308 RRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 406
            ++L TD PYG    M L +G+DA GRKQKGKGV
Sbjct:   41 KKLKTDKPYGINGSMSLRDGVDASGRKQKGKGV 73

[Close]

BLAST of HO066424 vs. SwissProt
Match: PSBR_SOLTU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum tuberosum GN=PSBR PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.847e-23
Identity = 40/58 (68.97%), Postives = 43/58 (74.14%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            YQ+VDKYGANVDGYSPIY   +WS +GDVY GGTTGLAIWAVT          LVYNT
Sbjct:   76 YQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLVGILAGGALLVYNT 133

HSP 2 Score: 42.743 bits (99), Expect = 8.847e-23
Identity = 28/61 (45.90%), Postives = 36/61 (59.02%), Query Frame = -1

Query:  308 TIEKXSIEXDLPVNVQGPSDCGHVXS--RRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 484
            T+EK S++  LP   +  S    V S  ++L TD PYG    M L +G+DA GRK KGKGV
Sbjct:   16 TLEKTSVKG-LPSLARSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGV 75

[Close]

BLAST of HO066424 vs. SwissProt
Match: PSBR_SOLLC (Photosystem II 10 kDa polypeptide, chloroplastic OS=Solanum lycopersicum GN=PSBR PE=2 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 8.847e-23
Identity = 40/58 (68.97%), Postives = 43/58 (74.14%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            YQ+VDKYGANVDGYSPIY   +WS +GDVY GGTTGLAIWAVT          LVYNT
Sbjct:   76 YQYVDKYGANVDGYSPIYNTDEWSPSGDVYVGGTTGLAIWAVTLLGILAGGALLVYNT 133

HSP 2 Score: 42.743 bits (99), Expect = 8.847e-23
Identity = 28/61 (45.90%), Postives = 36/61 (59.02%), Query Frame = -1

Query:  308 TIEKXSIEXDLPVNVQGPSDCGHVXS--RRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 484
            T+EK S++  LP   +  S    V S  ++L TD PYG    M L +G+DA GRK KGKGV
Sbjct:   16 TLEKISVKG-LPSLTRSSSSFKVVASGVKKLKTDKPYGINGSMALRDGVDASGRKPKGKGV 75

[Close]

BLAST of HO066424 vs. SwissProt
Match: PSBR_BRACM (Photosystem II 10 kDa polypeptide, chloroplastic OS=Brassica campestris GN=PSBR PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 7.255e-22
Identity = 40/58 (68.97%), Postives = 43/58 (74.14%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            Y+FVDKYGANVDGYSPIY   +WSA+GDVY GG TGLAIWAVT          LVYNT
Sbjct:   79 YKFVDKYGANVDGYSPIYNEDEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNT 136

HSP 2 Score: 40.4318 bits (93), Expect = 7.255e-22
Identity = 26/65 (40.00%), Postives = 34/65 (52.31%), Query Frame = -1

Query:  308 PRCSTIEKXSIEXDLPVNVQGPSDCGHVXS--RRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 496
            P   T+EK S      +    PS    V S  +++ TD P+G    MDL +G+DA GRK KG GV
Sbjct:   14 PAGFTVEKMSARGLPSLTRASPSSFRIVASGVKKIKTDKPFGVNGSMDLRDGVDASGRKGKGYGV 78

[Close]

BLAST of HO066424 vs. SwissProt
Match: PSBR_ARATH (Photosystem II 10 kDa polypeptide, chloroplastic OS=Arabidopsis thaliana GN=PSBR PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 1.008e-20
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            Y++VDKYGANVDGYSPIY   +WSA+GDVY GG TGLAIWAVT          LVYNT
Sbjct:   78 YKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNT 135

HSP 2 Score: 37.3502 bits (85), Expect = 1.008e-20
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = -1

Query:  308 RRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 406
            +++ TD P+G    MDL +G+DA GRK KG GV
Sbjct:   45 KKIKTDKPFGINGSMDLRDGVDASGRKGKGYGV 77

[Close]

BLAST of HO066424 vs. SwissProt
Match: PSBR_SPIOL (Photosystem II 10 kDa polypeptide, chloroplastic OS=Spinacia oleracea GN=PSBR PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 2.220e-20
Identity = 41/58 (70.69%), Postives = 44/58 (75.86%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            YQFVDKYGANVDGYSPIY  ++W+ TGDVYAGGTTGL IWAVT          LVYNT
Sbjct:   78 YQFVDKYGANVDGYSPIYNEEEWAPTGDVYAGGTTGLLIWAVTLAGLLAGGALLVYNT 135

HSP 2 Score: 32.7278 bits (73), Expect = 2.220e-20
Identity = 15/33 (45.45%), Postives = 21/33 (63.64%), Query Frame = -1

Query:  308 RRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 406
            +++  D P G G  M L +G+D+ GRK  GKGV
Sbjct:   45 KKIKVDKPLGIGGGMKLRDGVDSSGRKPTGKGV 77

[Close]

BLAST of HO066424 vs. SwissProt
Match: PSBR_HORVU (Photosystem II 10 kDa polypeptide, chloroplastic OS=Hordeum vulgare GN=PSBR PE=3 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 2.521e-18
Identity = 37/58 (63.79%), Postives = 42/58 (72.41%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            YQF DKYGANVDGYSPIY P++WS +GDVY GG TGL +WAVT          LVY+T
Sbjct:   76 YQFADKYGANVDGYSPIYTPEEWSPSGDVYVGGKTGLFLWAVTLAGILLGGALLVYST 133

HSP 2 Score: 31.9574 bits (71), Expect = 2.521e-18
Identity = 15/34 (44.12%), Postives = 21/34 (61.76%), Query Frame = -1

Query:  308 SRRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 409
            ++++ T  PYG G  +    G+DA GR  KGKGV
Sbjct:   42 AKKVQTAQPYGPGGGVAFKEGVDASGRVAKGKGV 75

[Close]

BLAST of HO066424 vs. TrEMBL
Match: Q6V7X5_TRIPR (10 kDa photosystem II polypeptide OS=Trifolium pratense PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 1.398e-29
Identity = 46/58 (79.31%), Postives = 46/58 (79.31%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            YQFVDKYGANVDGYSPIYEPKDWS TGDVY GGTTGLAIWAVT          LVYNT
Sbjct:   74 YQFVDKYGANVDGYSPIYEPKDWSPTGDVYTGGTTGLAIWAVTLAGLLAGGALLVYNT 131

HSP 2 Score: 58.151 bits (139), Expect = 1.398e-29
Identity = 33/58 (56.90%), Postives = 39/58 (67.24%), Query Frame = -1

Query:  308 IEKXSIEXDLPVNVQGPSDCGHVXSRRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 481
            +EK S+   LP N+  P        +++ TDTPYGTG  MDLPNGLDA GRKQKGKGV
Sbjct:   18 VEKSSVRG-LP-NLSRPFRVVASGVKKIKTDTPYGTGGGMDLPNGLDASGRKQKGKGV 73

[Close]

BLAST of HO066424 vs. TrEMBL
Match: B0L635_CICAR (10 kDa photosystem II polypeptide (Fragment) OS=Cicer arietinum PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 5.787e-24
Identity = 33/33 (100.00%), Postives = 33/33 (100.00%), Query Frame = -2

Query:  208 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGG 306
            YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGG
Sbjct:   74 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGG 106

HSP 2 Score: 60.077 bits (144), Expect = 5.787e-24
Identity = 35/63 (55.56%), Postives = 42/63 (66.67%), Query Frame = -1

Query:  308 PRCSTIEKXSIEXDLPVNVQGPSDCGHVXSRRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 496
            P   TIEK S++  LP ++  P        +++ TDTPYGTG  MDLPNGLDA GRKQKGKGV
Sbjct:   13 PTPFTIEKSSVKG-LP-SISRPFRVVASGIKKIKTDTPYGTGGGMDLPNGLDASGRKQKGKGV 73

[Close]

BLAST of HO066424 vs. TrEMBL
Match: C6SW43_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.639e-23
Identity = 45/58 (77.59%), Postives = 46/58 (79.31%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            YQFVDKYGANVDGYSPIY+ KDWS TGDVYAGGTTGLAIWAVT          LVYNT
Sbjct:   77 YQFVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNT 134

HSP 2 Score: 40.4318 bits (93), Expect = 1.639e-23
Identity = 28/65 (43.08%), Postives = 35/65 (53.85%), Query Frame = -1

Query:  308 PRCSTIEKXSIEXDLPVNVQGPSDCGHVXS--RRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 496
            P   T+EK S+   LP   +  S    V S  +++ TD PYG    M L  G+DA GRK KGKGV
Sbjct:   13 PAPFTVEKSSVRG-LPSLSRNSSSFRVVASGGKKIKTDKPYGINGGMALREGVDASGRKGKGKGV 76

[Close]

BLAST of HO066424 vs. TrEMBL
Match: C6SWI3_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 94.7449 bits (234), Expect = 1.647e-23
Identity = 45/58 (77.59%), Postives = 46/58 (79.31%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            YQFVDKYGANVDGYSPIY+ KDWS TGDVYAGGTTGLAIWAVT          LVYNT
Sbjct:   76 YQFVDKYGANVDGYSPIYDTKDWSPTGDVYAGGTTGLAIWAVTLLGLLAGGALLVYNT 133

HSP 2 Score: 40.4318 bits (93), Expect = 1.647e-23
Identity = 28/64 (43.75%), Postives = 35/64 (54.69%), Query Frame = -1

Query:  308 PRCSTIEKXSIEXDLPVNVQGPSDCGHVXS-RRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 496
            P   T+EK S+   LP   +  S    V S +++ TD PYG    M L +G DA GRK KGKGV
Sbjct:   13 PAPFTVEKSSVRG-LPSLSRNSSSFRVVASGKKIKTDKPYGINGGMALRDGTDASGRKGKGKGV 75

[Close]

BLAST of HO066424 vs. TrEMBL
Match: A9PAP8_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_661166 PE=2 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 2.815e-23
Identity = 42/58 (72.41%), Postives = 45/58 (77.59%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            YQFVDKYGANVDGYSPIY+PKDWS +G+VY GGTTGL IWAVT          LVYNT
Sbjct:   75 YQFVDKYGANVDGYSPIYDPKDWSPSGEVYVGGTTGLLIWAVTLAGLLAGGALLVYNT 132

HSP 2 Score: 43.1282 bits (100), Expect = 2.815e-23
Identity = 22/34 (64.71%), Postives = 23/34 (67.65%), Query Frame = -1

Query:  308 SRRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 409
            SR+  TD PYG    MDL  GLDA GRK KGKGV
Sbjct:   41 SRKSKTDQPYGINGGMDLRGGLDASGRKGKGKGV 74

[Close]

BLAST of HO066424 vs. TrEMBL
Match: Q2PXN6_ARAHY (Chloroplast photosystem II 10 kDa protein (Fragment) OS=Arachis hypogaea PE=2 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 4.770e-23
Identity = 44/58 (75.86%), Postives = 45/58 (77.59%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            YQFVDKYGANVDGYSPIY+ KDWS TGDVY GGTTGLAIWAVT          LVYNT
Sbjct:   67 YQFVDKYGANVDGYSPIYDQKDWSPTGDVYTGGTTGLAIWAVTLVGLLAGGALLVYNT 124

HSP 2 Score: 40.4318 bits (93), Expect = 4.770e-23
Identity = 19/33 (57.58%), Postives = 24/33 (72.73%), Query Frame = -1

Query:  308 RRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 406
            +++ TD PYG    M+L +GLDA GRK KGKGV
Sbjct:   34 KKIKTDKPYGINGGMNLRDGLDASGRKGKGKGV 66

[Close]

BLAST of HO066424 vs. TrEMBL
Match: B9SVD3_RICCO (Photosystem II 10 kDa polypeptide, chloroplast, putative OS=Ricinus communis GN=RCOM_0565210 PE=4 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 1.766e-22
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            YQFVDKYGANVDGYSPIY   +WS TGDVYAGG TGLAIWA+T          LVYNT
Sbjct:   76 YQFVDKYGANVDGYSPIYNTDEWSPTGDVYAGGATGLAIWAITLAGLLAGGALLVYNT 133

HSP 2 Score: 43.8986 bits (102), Expect = 1.766e-22
Identity = 25/63 (39.68%), Postives = 33/63 (52.38%), Query Frame = -1

Query:  308 PRCSTIEKXSIEXDLPVNVQGPSDCGHVXSRRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 496
            P   T++K S    LP   +          +++ TD PYG G  M+L NG+DA GRK  GKGV
Sbjct:   13 PSPFTVQKSSSVRGLPTLSRRTFRIEASGGKKIKTDKPYGIGGGMELRNGVDASGRKPTGKGV 75

[Close]

BLAST of HO066424 vs. TrEMBL
Match: D6BRD6_9ROSI (Chloroplast photosystem II 10 kDa polypeptide OS=Jatropha curcas PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 1.782e-22
Identity = 42/58 (72.41%), Postives = 44/58 (75.86%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            YQ+VDKYGANVDGYSPIY   +WS TGDVYAGGTTGLAIWAVT          LVYNT
Sbjct:   75 YQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGTTGLAIWAVTLLGILAGGALLVYNT 132

HSP 2 Score: 42.743 bits (99), Expect = 1.782e-22
Identity = 20/33 (60.61%), Postives = 24/33 (72.73%), Query Frame = -1

Query:  308 RRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 406
            +++ TD PYG G  M+L NGLDA GRK  GKGV
Sbjct:   42 KKIKTDKPYGIGGGMNLRNGLDASGRKATGKGV 74

[Close]

BLAST of HO066424 vs. TrEMBL
Match: A9PH94_POPTR (Putative uncharacterized protein OS=Populus trichocarpa GN=POPTRDRAFT_674736 PE=2 SV=1)

HSP 1 Score: 82.8037 bits (203), Expect = 1.782e-22
Identity = 39/58 (67.24%), Postives = 42/58 (72.41%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            YQ+VDKYGANVDGYSPIY   +WS TGDVYAGG TGL IWAVT          LVY+T
Sbjct:   75 YQYVDKYGANVDGYSPIYNTDEWSPTGDVYAGGKTGLLIWAVTLAGILAGGALLVYST 132

HSP 2 Score: 48.9062 bits (115), Expect = 1.782e-22
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = -1

Query:  308 PRCSTIEKXSIEXDLPVNVQGPSDCGHVXSRRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 496
            P   T+EK S+   LP   +          +++ TDTPYGTG  M+L +GLDA GRK KGKGV
Sbjct:   13 PSPFTVEKSSVRG-LPTLSRRTFKIEASGVKKIKTDTPYGTGGGMNLRDGLDASGRKPKGKGV 74

[Close]

BLAST of HO066424 vs. TrEMBL
Match: A9PHU8_POPTR (Putative uncharacterized protein OS=Populus trichocarpa GN=POPTRDRAFT_569170 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.019e-22
Identity = 39/63 (61.90%), Postives = 43/63 (68.25%), Query Frame = -2

Query:  133 RERVCYQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 321
            R +  YQ+VDKYGANVDGYSPIY   +WS +GDVYAGG TGL IWAVT          LVY T
Sbjct:   70 RGKGVYQYVDKYGANVDGYSPIYNADEWSPSGDVYAGGKTGLLIWAVTLAGILAGGALLVYTT 132

HSP 2 Score: 49.6766 bits (117), Expect = 3.019e-22
Identity = 29/63 (46.03%), Postives = 37/63 (58.73%), Query Frame = -1

Query:  308 PRCSTIEKXSIEXDLPVNVQGPSDCGHVXSRRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 496
            P   T+EK S+   LP   +          +++ TDTPYGTG  M+L NGLDA GRK +GKGV
Sbjct:   13 PSPFTVEKSSVRG-LPTLSRRSFKIEASGVKKIKTDTPYGTGGGMNLRNGLDASGRKPRGKGV 74

[Close]

BLAST of HO066424 vs. TAIR peptide
Match: AT1G79040.1 (| Symbols: PSBR | photosystem II subunit R | chr1:29736085-29736781 FORWARD LENGTH=140)

HSP 1 Score: 84.3445 bits (207), Expect = 9.725e-22
Identity = 39/58 (67.24%), Postives = 43/58 (74.14%), Query Frame = -2

Query:  133 YQFVDKYGANVDGYSPIYEPKDWSATGDVYAGGTTGLAIWAVTXXXXXXXXXXLVYNT 306
            Y++VDKYGANVDGYSPIY   +WSA+GDVY GG TGLAIWAVT          LVYNT
Sbjct:   78 YKYVDKYGANVDGYSPIYNENEWSASGDVYKGGVTGLAIWAVTLAGILAGGALLVYNT 135

HSP 2 Score: 37.3502 bits (85), Expect = 9.725e-22
Identity = 17/33 (51.52%), Postives = 23/33 (69.70%), Query Frame = -1

Query:  308 RRL*TDTPYGTGVVMDLPNGLDAXGRKQKGKGV 406
            +++ TD P+G    MDL +G+DA GRK KG GV
Sbjct:   45 KKIKTDKPFGINGSMDLRDGVDASGRKGKGYGV 77

The following BLAST results are available for this feature:

BLAST of HO066424 vs. SwissProt
BLAST of HO066424 vs. TrEMBL
BLAST of HO066424 vs. TAIR peptide

BLAST of HO066424 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Swissprot)
Total hits: 7


Match Name	E-value	Identity	Description
PSBR_TOBAC	4.021e-23	70.69	Photosystem II 10 kDa polypeptide, chloroplastic O...	[more]
PSBR_SOLTU	8.847e-23	68.97	Photosystem II 10 kDa polypeptide, chloroplastic O...	[more]
PSBR_SOLLC	8.847e-23	68.97	Photosystem II 10 kDa polypeptide, chloroplastic O...	[more]
PSBR_BRACM	7.255e-22	68.97	Photosystem II 10 kDa polypeptide, chloroplastic O...	[more]
PSBR_ARATH	1.008e-20	67.24	Photosystem II 10 kDa polypeptide, chloroplastic O...	[more]
PSBR_SPIOL	2.220e-20	70.69	Photosystem II 10 kDa polypeptide, chloroplastic O...	[more]
PSBR_HORVU	2.521e-18	63.79	Photosystem II 10 kDa polypeptide, chloroplastic O...	[more]

BLAST of HO066424 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Cicer arietinum unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
Q6V7X5_TRIPR	1.398e-29	79.31	10 kDa photosystem II polypeptide OS=Trifolium pra...	[more]
B0L635_CICAR	5.787e-24	100.00	10 kDa photosystem II polypeptide (Fragment) OS=Ci...	[more]
C6SW43_SOYBN	1.639e-23	77.59	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6SWI3_SOYBN	1.647e-23	77.59	Putative uncharacterized protein OS=Glycine max PE...	[more]
A9PAP8_POPTR	2.815e-23	72.41	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
Q2PXN6_ARAHY	4.770e-23	75.86	Chloroplast photosystem II 10 kDa protein (Fragmen...	[more]
B9SVD3_RICCO	1.766e-22	70.69	Photosystem II 10 kDa polypeptide, chloroplast, pu...	[more]
D6BRD6_9ROSI	1.782e-22	72.41	Chloroplast photosystem II 10 kDa polypeptide OS=J...	[more]
A9PH94_POPTR	1.782e-22	67.24	Putative uncharacterized protein OS=Populus tricho...	[more]
A9PHU8_POPTR	3.019e-22	61.90	Putative uncharacterized protein OS=Populus tricho...	[more]

BLAST of HO066424 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Cicer arietinum unigene v1 vs TAIR 10 peptide)
Total hits: 1


Match Name	E-value	Identity	Description
AT1G79040.1	9.725e-22	67.24	\| Symbols: PSBR \| photosystem II subunit R \| chr1:...	[more]

InterPro

Analysis Name: InterProScan analysis for Cicer arietinum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 20..30 score
None	No IPR available	SEG	seg	seg	coord: 42..56 score
None	No IPR available	SEG	seg	seg	coord: 44..55 score
None	No IPR available	SEG	seg	seg	coord: 111..121 score
IPR006814	Photosystem II PsbR	PFAM	PF04725	PsbR	coord: 64..130 score: 1.5

Properties


Property Name	Value
Singlet in analysis	Cicer arietinum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>HO066424 ID=HO066424; Name=HO066424; organism=Cicer arietinum; type=EST; length=919bp
CGAATCCATACAACATTTATAGAACAGAAGGAACTATGTCCACAAGTATT
TGATGAATATATCCTTAGAGTTACATGGAATAATTTTACAACTTAAATAT
GAACTTAGCAAAGTCTATTGTGACAAAGCACTTGTGTTGTAGACAAGAAG
CGCACCACCAGCCAGAAGACCAGCTAGAGTTACTGCCCATATAGCCAACC
CAGTCGTACCTCCGGCGTANACGTCACCGGTTGCAGACCAGTCCTTGGGT
TCATAGATAGGACTGTATCCATCAACATTAGCACCATATTTGTCCACAAA
CTGGTAACACACCCTTTCCCTTTTGTTTCCTGCCANAAGCATCAAGTCCA
TTGGGAAGGTCCATGACCACACCAGTTCCATAGGGTGTGTCAGTCTATAA
TCTTCTTGATANCACATGGCCACAATCTGAAGGGCCTTGAACATTGACAG
GCAAGTCCTNTTCAATTGAANATTTCTCAATTGTAGAACACCGGGGGNGT
ACAGNGACTAACCAANAAACTACACAAACGAAACGCCCAAATCACATTCG
AAACGAACTGCNCAATTATATTACCTTNTCCNCATGCACGAACACACCAG
NCGACNTCAGGNGGACCACCCACAGCGGAGTATAAAAACCACANAACAGG
GACCCCANGGCAGGCAAAACCAAANGACCGACACTTAAAACAANTCAGGG
CACAAGTTTTCACCACCCGNCGAGANGGCACTCACACAATAANGGTGACG
NGCGACCCCAGAANANGAAACGCAACAATAGGAACAAACGAAATCAGCGA
AGGGACCANACCAAAAGTAATCANCAACACAACTAAGTGANAAGTCAGAC
GCGCAGTAGTAATTTNACAANCGAGACTCAAACAACGAGGCACAGAGTCC
GGTAATACTAGACAACAAC

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **Cellular Component**
Term	Definition
GO:0009654	photosystem II oxygen evolving complex
GO:0042651	thylakoid membrane

Vocabulary: **Biological Process**
Term	Definition
GO:0015979	photosynthesis

Vocabulary: **INTERPRO**
Term	Definition
IPR006814	PSII_PsbR

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