GT619303

EST Overview
NameGT619303
Unique NameGT619303
TypeEST
OrganismLens culinaris (lentil)
Sequence length499
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT619303 vs. TrEMBL
Match: B9SCL2_RICCO (Bromodomain-containing protein, putative OS=Ricinus communis GN=RCOM_0475180 PE=4 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 7.505e-12
Identity = 43/106 (40.57%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  193 MIATETIAPTTKLKIKFSTKRIEVVSGPR-CQFGEKVSQLDANRSCNSIK-KSSPLYSK--KREPSGNIEGTKNKRQKIDRKGSQMCANILKCLTSHDYGWVFKVP 498
            M+A   +A   KLKIKFS+++I+ VSG + C F   V +   +R+C+    K +P      KR PS  +EG +NK++K+DR     CA+++K L  H  GWVFK P
Sbjct:    1 MVAVPVVAE--KLKIKFSSRKIDTVSGRKACDFAHNVEKNYHSRACDRENMKQNPRERSAIKRGPSEMVEGQQNKKRKMDRSVIHQCASLVKSLMDHPCGWVFKEP 104          
BLAST of GT619303 vs. TrEMBL
Match: B9SXX6_RICCO (Bromodomain-containing protein, putative OS=Ricinus communis GN=RCOM_1207090 PE=4 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 2.414e-10
Identity = 41/106 (38.68%), Postives = 62/106 (58.49%), Query Frame = 1
Query:  193 MIATETIAPTTKLKIKFSTKRIEVVSGPR-CQFGEKVSQLDANRSCNSIK-KSSPLYSK--KREPSGNIEGTKNKRQKIDRKGSQMCANILKCLTSHDYGWVFKVP 498
            +IA   +A   KLKIKFS+++I+ VSG + C F   V +   +R+C++   K +P      KR P+  +EG   K++K+DR     CA+++K L  H  GWVFK P
Sbjct:    2 IIAVPVVAE--KLKIKFSSRKIDGVSGRKACGFAHNVEKNYRSRACDTENMKQNPRERSAIKRRPTEMVEGQSKKKRKMDRSVIHQCASLVKSLMDHPCGWVFKEP 105          
BLAST of GT619303 vs. TrEMBL
Match: B9S1A3_RICCO (Bromodomain-containing protein, putative OS=Ricinus communis GN=RCOM_0636080 PE=4 SV=1)

HSP 1 Score: 63.929 bits (154), Expect = 5.947e-9
Identity = 38/106 (35.85%), Postives = 59/106 (55.66%), Query Frame = 1
Query:  193 MIATETIAPTTKLKIKFSTKRIEVVSGPR-CQFGEKVSQLDANRSC---NSIKKSSPLYSKKREPSGNIEGTKNKRQKIDRKGSQMCANILKCLTSHDYGWVFKVP 498
            MI+TE +    KLKIKFS+ +I+ +S    C     V +   ++ C   N  +K +   + KR PS  +EG + K++K+DR     C +++K L +H  GWVFK P
Sbjct:    1 MISTEPVV-AKKLKIKFSSHKIDTISVKNACDMARNVEKNYHSQVCDIENMKQKLTECSAIKRGPSDMVEGQQQKKRKMDRGVIHQCTSLVKSLMNHPCGWVFKEP 105          
BLAST of GT619303 vs. TrEMBL
Match: A5C0I5_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007433 PE=4 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 1.730e-8
Identity = 40/103 (38.83%), Postives = 51/103 (49.51%), Query Frame = 1
Query:  193 MIATETIAPTTKLKIKFSTKRIEVVSGP-RCQFGEKVSQLDANRSCNSIKKSSPLYSKKREPSGNIEGTKNKRQKIDRKGSQMCANILKCLTSHDYGWVFKVP 498
            M A   I P  KLKIKF+ K++E       C+FG  +S  D           S   +KKR   G  +  K KRQK+DR  +  C +ILK L +H  GWVF  P
Sbjct:    1 MDAIGKILPNRKLKIKFAAKKVEAEPVTLSCEFGNDISLTD----------ESVHGTKKRGXPGITDVPKAKRQKMDRSTTLQCTSILKXLMTHPAGWVFNQP 93          
BLAST of GT619303 vs. TrEMBL
Match: B9GJ33_POPTR (Global transcription factor group OS=Populus trichocarpa GN=GTE901 PE=4 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 6.575e-8
Identity = 38/105 (36.19%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  193 MIATETIAPTTKLKIKFSTKRIEVVSGPRCQFGEK---VSQLDANRSCNSIKKSSPLYSKKREPSGNIEGTKNKRQKIDRKGSQMCANILKCLTSHDYGWVFKVP 498
            MIA+  +    KL IK +++RI+ + G +    E+    S  + + S  + +KS    S+KR P   IE  + KRQK+DR  +Q C+++LK L +H  GWVF  P
Sbjct:    1 MIASGNVT-MKKLTIKIASQRIQAIPGKKLLGAEQSCSASMGENHGSQMTKQKSVAPVSRKRGPPEMIECQQQKRQKMDRSVTQQCSSLLKSLMAHPAGWVFNKP 104          
BLAST of GT619303 vs. TrEMBL
Match: B9I128_POPTR (Global transcription factor group OS=Populus trichocarpa GN=GTE902 PE=4 SV=1)

HSP 1 Score: 58.9214 bits (141), Expect = 1.913e-7
Identity = 39/110 (35.45%), Postives = 57/110 (51.82%), Query Frame = 1
Query:  193 MIATETIAPTTKLKIKFSTKRIEVVSGPRCQFGEKVSQLDANRSCNSI--------KKSSPLYSKKREPSGNIEGTKNKRQKIDRKGSQMCANILKCLTSHDYGWVFKVP 498
            MIA  ++    KL IK +++RIEV+ G +    E+   +  + +  S         +KSS   S+KR P   IE  + KR K+DR  +Q C+ +LK L  H  GWVF  P
Sbjct:    1 MIAAGSVV-MKKLTIKIASQRIEVIPGKKLLAAERSCSVSVSENPGSQTSKSEIVKQKSSVSGSRKRGPPKMIECKQQKRLKMDRAVTQQCSALLKSLMVHPAGWVFNKP 109          
The following BLAST results are available for this feature:
BLAST of GT619303 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 6
Match NameE-valueIdentityDescription
B9SCL2_RICCO7.505e-1240.57Bromodomain-containing protein, putative OS=Ricinu... [more]
B9SXX6_RICCO2.414e-1038.68Bromodomain-containing protein, putative OS=Ricinu... [more]
B9S1A3_RICCO5.947e-935.85Bromodomain-containing protein, putative OS=Ricinu... [more]
A5C0I5_VITVI1.730e-838.83Putative uncharacterized protein OS=Vitis vinifera... [more]
B9GJ33_POPTR6.575e-836.19Global transcription factor group OS=Populus trich... [more]
B9I128_POPTR1.913e-735.45Global transcription factor group OS=Populus trich... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 41..59
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT619303 ID=GT619303; Name=GT619303; organism=Lens culinaris; type=EST; length=499bp
CTCTTTCCGTCGACGTTCGATTAGGGCTGCGCAGCCCTTCATCTCTGGTT
CAGTTAAGGCTGTCCAGGTGATCTGTTATCATATGGACTGATAGTTTTCT
TGATGCCTTTGTGCCAAAGGAGTTAAAGTCTTCTGACTTTTGAGAACTTG
GAAATTTGGAGAGTGTCCTTGCACTCACCGTTGATATCCACCATGATTGC
CACGGAGACTATTGCACCAACTACAAAGTTGAAGATCAAATTCTCCACCA
AAAGGATAGAAGTTGTTTCTGGGCCAAGATGTCAGTTTGGAGAGAAAGTG
TCTCAACTTGATGCAAATAGATCCTGTAATTCCATCAAAAAGTCCTCACC
GCTATATTCCAAGAAAAGGGAACCATCTGGGAATATTGAGGGTACGAAGA
ATAAAAGGCAAAAAATTGATCGGAAAGGGTCGCAGATGTGTGCTAATATT
CTCAAATGCTTAACATCTCATGATTATGGCTGGGTGTTTAAGGTGCCTG
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