GT623041

EST Overview
NameGT623041
Unique NameGT623041
TypeEST
OrganismLens culinaris (lentil)
Sequence length502
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Homology
BLAST of GT623041 vs. TrEMBL
Match: C6TFE8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.039e-17
Identity = 57/111 (51.35%), Postives = 66/111 (59.46%), Query Frame = -3
Query:   27 SVPYPYLQASLFW*NPVEHKS*VVLYPCSCSLALHFQRNG*SVSPLQFSYRLCHNTQ----KEWLV---KEKLRATAMMKR*AVIEELGSERMKGERRKIGVEWRAEKEML 338
            S P  YL+  L W  PVEHK+ VVLYP SC LA HFQ NG S  P QFS  LCH+TQ    KEW +   +EK R   ++KR     E GSER KGER    +E R E+ ML
Sbjct:   35 SSPPHYLRTCLSWKVPVEHKALVVLYPSSCPLASHFQMNGRSAFPWQFSGPLCHSTQKGLGKEWRLQRPREKRRKWRVVKR-----EFGSERRKGERWNCAIERRVEEVML 140          
BLAST of GT623041 vs. TrEMBL
Match: D7LKT6_ARALY (Plastid-specific ribosomal protein 4 (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=PSRP4 PE=4 SV=1)

HSP 1 Score: 83.9593 bits (206), Expect = 5.525e-15
Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 2
Query:  170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304
            VYCGRGDRKTAKGKRF+HSFGNARPRNKNKGRGP R+  PP   R
Sbjct:   53 VYCGRGDRKTAKGKRFNHSFGNARPRNKNKGRGPERVPVPPAPPR 97          
BLAST of GT623041 vs. TrEMBL
Match: B9SZC7_RICCO (Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_1151100 PE=4 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 9.424e-15
Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 2
Query:  170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAP 289
            VYCGRGD+KTAKGKRF+HSFGNARPRNKNKGRGPPRI  P
Sbjct:   53 VYCGRGDKKTAKGKRFNHSFGNARPRNKNKGRGPPRIPVP 92          
BLAST of GT623041 vs. TrEMBL
Match: D7TH91_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033979001 PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.581e-14
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2
Query:  170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPP 292
            VYCGRGD+KTAKGKRF+HSFGNARPRNK KGRGPPR   PP
Sbjct:   54 VYCGRGDKKTAKGKRFNHSFGNARPRNKKKGRGPPRAPIPP 94          
BLAST of GT623041 vs. TrEMBL
Match: A5C1F7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030951 PE=4 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 3.581e-14
Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2
Query:  170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPP 292
            VYCGRGD+KTAKGKRF+HSFGNARPRNK KGRGPPR   PP
Sbjct:   53 VYCGRGDKKTAKGKRFNHSFGNARPRNKKKGRGPPRAPIPP 93          
BLAST of GT623041 vs. TrEMBL
Match: C5XFH5_SORBI (Putative uncharacterized protein Sb03g043130 OS=Sorghum bicolor GN=Sb03g043130 PE=4 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 6.108e-14
Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 2
Query:  170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304
            VYCGRGD+KT +GKRF+HS+GNARPRNK KG GPPR++APP   R
Sbjct:   66 VYCGRGDKKTKRGKRFNHSYGNARPRNKKKGTGPPRLFAPPAPPR 110          
BLAST of GT623041 vs. TrEMBL
Match: Q60EZ7_ORYSJ (Os05g0186000 protein OS=Oryza sativa subsp. japonica GN=OJ1111_A10.15 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.171e-13
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2
Query:  170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304
            VYCGRGD+KT +GKRF+HS+GNARPRNK KG GP R++APP   R
Sbjct:   62 VYCGRGDKKTKRGKRFNHSYGNARPRNKKKGTGPARLFAPPAPPR 106          
BLAST of GT623041 vs. TrEMBL
Match: B8AYV7_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_18738 PE=4 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.171e-13
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2
Query:  170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304
            VYCGRGD+KT +GKRF+HS+GNARPRNK KG GP R++APP   R
Sbjct:   62 VYCGRGDKKTKRGKRFNHSYGNARPRNKKKGTGPARLFAPPAPPR 106          
BLAST of GT623041 vs. TrEMBL
Match: B6TPC8_MAIZE (PSRP4 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.171e-13
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2
Query:  170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304
            VYCGRGD+KT +GKRF+HS+GNARPRNK KG GP R++APP   R
Sbjct:   66 VYCGRGDKKTKRGKRFNHSYGNARPRNKKKGTGPARLFAPPAPPR 110          
BLAST of GT623041 vs. TrEMBL
Match: B6T2D1_MAIZE (PSRP4 OS=Zea mays PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 5.171e-13
Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2
Query:  170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304
            VYCGRGD+KT +GKRF+HS+GNARPRNK KG GP R++APP   R
Sbjct:   66 VYCGRGDKKTKRGKRFNHSYGNARPRNKKKGTGPARLFAPPAPPR 110          
BLAST of GT623041 vs. SwissProt
Match: RR31_ARATH (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana GN=RPS31 PE=1 SV=1)

HSP 1 Score: 82.0333 bits (201), Expect = 1.685e-15
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 2
Query:  170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304
            VYCGRGDRKTAKGKRF+HSFGNARPRNK+KGRGP R+  PP   R
Sbjct:   53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSKGRGPERVPVPPAPPR 97          
BLAST of GT623041 vs. SwissProt
Match: RR31_SPIOL (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea GN=RPS31 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.863e-14
Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 2
Query:  170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPR 277
            +YCGRGDRKTAKGKRF+HSFGNARP+NKNKGRGPP+
Sbjct:   52 IYCGRGDRKTAKGKRFNHSFGNARPKNKNKGRGPPK 87          
BLAST of GT623041 vs. TAIR peptide
Match: AT2G38140.1 (| Symbols: PSRP4 | plastid-specific ribosomal protein 4 | chr2:15980948-15981459 FORWARD LENGTH=118)

HSP 1 Score: 82.0333 bits (201), Expect = 1.859e-16
Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 2
Query:  170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304
            VYCGRGDRKTAKGKRF+HSFGNARPRNK+KGRGP R+  PP   R
Sbjct:   53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSKGRGPERVPVPPAPPR 97          
The following BLAST results are available for this feature:
BLAST of GT623041 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10
Match NameE-valueIdentityDescription
C6TFE8_SOYBN2.039e-1751.35Putative uncharacterized protein OS=Glycine max PE... [more]
D7LKT6_ARALY5.525e-1582.22Plastid-specific ribosomal protein 4 (Fragment) OS... [more]
B9SZC7_RICCO9.424e-1590.00Structural constituent of ribosome, putative OS=Ri... [more]
D7TH91_VITVI3.581e-1485.37Whole genome shotgun sequence of line PN40024, sca... [more]
A5C1F7_VITVI3.581e-1485.37Putative uncharacterized protein OS=Vitis vinifera... [more]
C5XFH5_SORBI6.108e-1473.33Putative uncharacterized protein Sb03g043130 OS=So... [more]
Q60EZ7_ORYSJ5.171e-1371.11Os05g0186000 protein OS=Oryza sativa subsp. japoni... [more]
B8AYV7_ORYSI5.171e-1371.11Putative uncharacterized protein OS=Oryza sativa s... [more]
B6TPC8_MAIZE5.171e-1371.11PSRP4 OS=Zea mays PE=2 SV=1[more]
B6T2D1_MAIZE5.171e-1371.11PSRP4 OS=Zea mays PE=2 SV=1[more]
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BLAST of GT623041 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 2
Match NameE-valueIdentityDescription
RR31_ARATH1.685e-1580.0030S ribosomal protein S31, chloroplastic OS=Arabid... [more]
RR31_SPIOL1.863e-1488.8930S ribosomal protein S31, chloroplastic OS=Spinac... [more]
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BLAST of GT623041 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT2G38140.11.859e-1680.00| Symbols: PSRP4 | plastid-specific ribosomal prot... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableSEGsegsegcoord: 3..15
score
NoneNo IPR availableSEGsegsegcoord: 3..56
score: NAcoord: 102..119
score
NoneNo IPR availableSEGsegsegcoord: 2..17
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT623041 ID=GT623041; Name=GT623041; organism=Lens culinaris; type=EST; length=502bp
TACCGCATCATCATCACTGCTTCTTCTAGCATCTCCTTCTCCGCTCTCCA
TTCCACTCCAATCTTCCTCCTCTCACCTTTCATTCTCTCGCTCCCTAACT
CTTCAATCACCGCTCATCTCTTCATCATTGCCGTCGCTCTCAGCTTCTCT
TTCACCAACCACTCTTTCTGTGTATTGTGGCAGAGGCGATAGGAAAACTG
CAAAGGGGAAACGCTTCAGCCATTCCTTTGGAAATGCAAGGCCAAGGAAC
AAGAACAAGGGTAGAGGACCACCTAGGATTTATGCTCCACCGGATTCTAC
CAGAAAAGAGAAGCTTGAAGATAAGGATAAGGAACTGATTAAGATTGACA
TTAAGGAATAAACCCCTCTTTTTTGTGGTTGAATCTTGTGTTGCAGTGTA
ACTATTTGAGTCTTTCATGATTTGTAGTTTTTGATATATGGATTTCATTT
GGGATATATTCTTCCGATTTTGCTTGTTATCGTTAATTGATTGTTGTTTG
GC
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