GT623041
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT623041 vs. TrEMBL
Match: C6TFE8_SOYBN (Putative uncharacterized protein OS=Glycine max PE=2 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.039e-17 Identity = 57/111 (51.35%), Postives = 66/111 (59.46%), Query Frame = -3 Query: 27 SVPYPYLQASLFW*NPVEHKS*VVLYPCSCSLALHFQRNG*SVSPLQFSYRLCHNTQ----KEWLV---KEKLRATAMMKR*AVIEELGSERMKGERRKIGVEWRAEKEML 338 S P YL+ L W PVEHK+ VVLYP SC LA HFQ NG S P QFS LCH+TQ KEW + +EK R ++KR E GSER KGER +E R E+ ML Sbjct: 35 SSPPHYLRTCLSWKVPVEHKALVVLYPSSCPLASHFQMNGRSAFPWQFSGPLCHSTQKGLGKEWRLQRPREKRRKWRVVKR-----EFGSERRKGERWNCAIERRVEEVML 140
BLAST of GT623041 vs. TrEMBL
Match: D7LKT6_ARALY (Plastid-specific ribosomal protein 4 (Fragment) OS=Arabidopsis lyrata subsp. lyrata GN=PSRP4 PE=4 SV=1) HSP 1 Score: 83.9593 bits (206), Expect = 5.525e-15 Identity = 37/45 (82.22%), Postives = 39/45 (86.67%), Query Frame = 2 Query: 170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304 VYCGRGDRKTAKGKRF+HSFGNARPRNKNKGRGP R+ PP R Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPRNKNKGRGPERVPVPPAPPR 97
BLAST of GT623041 vs. TrEMBL
Match: B9SZC7_RICCO (Structural constituent of ribosome, putative OS=Ricinus communis GN=RCOM_1151100 PE=4 SV=1) HSP 1 Score: 83.1889 bits (204), Expect = 9.424e-15 Identity = 36/40 (90.00%), Postives = 38/40 (95.00%), Query Frame = 2 Query: 170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAP 289 VYCGRGD+KTAKGKRF+HSFGNARPRNKNKGRGPPRI P Sbjct: 53 VYCGRGDKKTAKGKRFNHSFGNARPRNKNKGRGPPRIPVP 92
BLAST of GT623041 vs. TrEMBL
Match: D7TH91_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_7.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00033979001 PE=4 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.581e-14 Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2 Query: 170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPP 292 VYCGRGD+KTAKGKRF+HSFGNARPRNK KGRGPPR PP Sbjct: 54 VYCGRGDKKTAKGKRFNHSFGNARPRNKKKGRGPPRAPIPP 94
BLAST of GT623041 vs. TrEMBL
Match: A5C1F7_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_030951 PE=4 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 3.581e-14 Identity = 35/41 (85.37%), Postives = 37/41 (90.24%), Query Frame = 2 Query: 170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPP 292 VYCGRGD+KTAKGKRF+HSFGNARPRNK KGRGPPR PP Sbjct: 53 VYCGRGDKKTAKGKRFNHSFGNARPRNKKKGRGPPRAPIPP 93
BLAST of GT623041 vs. TrEMBL
Match: C5XFH5_SORBI (Putative uncharacterized protein Sb03g043130 OS=Sorghum bicolor GN=Sb03g043130 PE=4 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 6.108e-14 Identity = 33/45 (73.33%), Postives = 39/45 (86.67%), Query Frame = 2 Query: 170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304 VYCGRGD+KT +GKRF+HS+GNARPRNK KG GPPR++APP R Sbjct: 66 VYCGRGDKKTKRGKRFNHSYGNARPRNKKKGTGPPRLFAPPAPPR 110
BLAST of GT623041 vs. TrEMBL
Match: Q60EZ7_ORYSJ (Os05g0186000 protein OS=Oryza sativa subsp. japonica GN=OJ1111_A10.15 PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.171e-13 Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 Query: 170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304 VYCGRGD+KT +GKRF+HS+GNARPRNK KG GP R++APP R Sbjct: 62 VYCGRGDKKTKRGKRFNHSYGNARPRNKKKGTGPARLFAPPAPPR 106
BLAST of GT623041 vs. TrEMBL
Match: B8AYV7_ORYSI (Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_18738 PE=4 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.171e-13 Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 Query: 170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304 VYCGRGD+KT +GKRF+HS+GNARPRNK KG GP R++APP R Sbjct: 62 VYCGRGDKKTKRGKRFNHSYGNARPRNKKKGTGPARLFAPPAPPR 106
BLAST of GT623041 vs. TrEMBL
Match: B6TPC8_MAIZE (PSRP4 OS=Zea mays PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.171e-13 Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 Query: 170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304 VYCGRGD+KT +GKRF+HS+GNARPRNK KG GP R++APP R Sbjct: 66 VYCGRGDKKTKRGKRFNHSYGNARPRNKKKGTGPARLFAPPAPPR 110
BLAST of GT623041 vs. TrEMBL
Match: B6T2D1_MAIZE (PSRP4 OS=Zea mays PE=2 SV=1) HSP 1 Score: 77.411 bits (189), Expect = 5.171e-13 Identity = 32/45 (71.11%), Postives = 38/45 (84.44%), Query Frame = 2 Query: 170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304 VYCGRGD+KT +GKRF+HS+GNARPRNK KG GP R++APP R Sbjct: 66 VYCGRGDKKTKRGKRFNHSYGNARPRNKKKGTGPARLFAPPAPPR 110
BLAST of GT623041 vs. SwissProt
Match: RR31_ARATH (30S ribosomal protein S31, chloroplastic OS=Arabidopsis thaliana GN=RPS31 PE=1 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 1.685e-15 Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 2 Query: 170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304 VYCGRGDRKTAKGKRF+HSFGNARPRNK+KGRGP R+ PP R Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSKGRGPERVPVPPAPPR 97
BLAST of GT623041 vs. SwissProt
Match: RR31_SPIOL (30S ribosomal protein S31, chloroplastic OS=Spinacia oleracea GN=RPS31 PE=1 SV=2) HSP 1 Score: 78.5666 bits (192), Expect = 1.863e-14 Identity = 32/36 (88.89%), Postives = 36/36 (100.00%), Query Frame = 2 Query: 170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPR 277 +YCGRGDRKTAKGKRF+HSFGNARP+NKNKGRGPP+ Sbjct: 52 IYCGRGDRKTAKGKRFNHSFGNARPKNKNKGRGPPK 87
BLAST of GT623041 vs. TAIR peptide
Match: AT2G38140.1 (| Symbols: PSRP4 | plastid-specific ribosomal protein 4 | chr2:15980948-15981459 FORWARD LENGTH=118) HSP 1 Score: 82.0333 bits (201), Expect = 1.859e-16 Identity = 36/45 (80.00%), Postives = 39/45 (86.67%), Query Frame = 2 Query: 170 VYCGRGDRKTAKGKRFSHSFGNARPRNKNKGRGPPRIYAPPDSTR 304 VYCGRGDRKTAKGKRF+HSFGNARPRNK+KGRGP R+ PP R Sbjct: 53 VYCGRGDRKTAKGKRFNHSFGNARPRNKSKGRGPERVPVPPAPPR 97 The following BLAST results are available for this feature:
BLAST of GT623041 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 10
BLAST of GT623041 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot) Total hits: 2
BLAST of GT623041 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide) Total hits: 1
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT623041 ID=GT623041; Name=GT623041; organism=Lens culinaris; type=EST; length=502bpback to top |