GT626873

EST Overview


Name	GT626873
Unique Name	GT626873
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	561

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
KEGG analysis for Lens culinaris unigene v1	2011-01-05
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

[Close]

BLAST of GT626873 vs. TrEMBL
Match: D7TPE2_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_104.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00011117001 PE=4 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.852e-48
Identity = 98/115 (85.22%), Postives = 101/115 (87.83%), Query Frame = 2

Query:   32 CCSFSAA----------MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL 346
            CC F A           MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEE PRVKPKKPTAG+P+
Sbjct:   14 CCVFLAVFAGFRLHSPKMKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPM 128

[Close]

BLAST of GT626873 vs. TrEMBL
Match: B9S445_RICCO (Small nuclear ribonucleoprotein sm d1, putative OS=Ricinus communis GN=RCOM_0558720 PE=4 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 8.852e-48
Identity = 96/98 (97.96%), Postives = 97/98 (98.98%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL 346
            MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEE PRVKPKKPTAG+PL
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAGRPL 98

[Close]

BLAST of GT626873 vs. TrEMBL
Match: C6TN35_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 192.971 bits (489), Expect = 1.156e-47
Identity = 95/98 (96.94%), Postives = 97/98 (98.98%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL 346
            MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEE P++KPKKPTAGKPL
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPKIKPKKPTAGKPL 98

[Close]

BLAST of GT626873 vs. TrEMBL
Match: C6TBT7_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 1.510e-47
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL 346
            MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYY+LPDSLNLETLLVEE P++KPKKPTAGKPL
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYVLPDSLNLETLLVEETPKIKPKKPTAGKPL 98

[Close]

BLAST of GT626873 vs. TrEMBL
Match: C6TFD6_SOYBN (Putative uncharacterized protein OS=Glycine max PE=4 SV=1)

HSP 1 Score: 192.2 bits (487), Expect = 1.972e-47
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL 346
            MKLVRFLMKLNNETVSIELKNG +VHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAP++KPKKPTAGKPL
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGAVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPKIKPKKPTAGKPL 98

[Close]

BLAST of GT626873 vs. TrEMBL
Match: C5XWD2_SORBI (Putative uncharacterized protein Sb04g024330 OS=Sorghum bicolor GN=Sb04g024330 PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.575e-47
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL 346
            MKLVRFLMKLNNETV+IELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEE PRVKPKKPT+GKPL
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTSGKPL 98

[Close]

BLAST of GT626873 vs. TrEMBL
Match: B6SH29_MAIZE (Putative uncharacterized protein OS=Zea mays PE=4 SV=1)

HSP 1 Score: 191.815 bits (486), Expect = 2.575e-47
Identity = 94/98 (95.92%), Postives = 97/98 (98.98%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL 346
            MKLVRFLMKLNNETV+IELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEE PRVKPKKPT+GKPL
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTSGKPL 98

[Close]

BLAST of GT626873 vs. TrEMBL
Match: B6TXH2_MAIZE (Small nuclear ribonucleoprotein Sm D1 OS=Zea mays PE=4 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.364e-47
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL 346
            MKLVRFLMKLNNETV+IELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEE PRVKPKKPT GKPL
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTTGKPL 98

[Close]

BLAST of GT626873 vs. TrEMBL
Match: B6T1K6_MAIZE (Small nuclear ribonucleoprotein Sm D1 OS=Zea mays PE=4 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 3.364e-47
Identity = 94/98 (95.92%), Postives = 96/98 (97.96%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL 346
            MKLVRFLMKLNNETV+IELKNGT+VHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEE PRVKPKKPT GKPL
Sbjct:    1 MKLVRFLMKLNNETVTIELKNGTVVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTTGKPL 98

[Close]

BLAST of GT626873 vs. TrEMBL
Match: B9H869_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_714948 PE=4 SV=1)

HSP 1 Score: 190.274 bits (482), Expect = 7.493e-47
Identity = 92/98 (93.88%), Postives = 97/98 (98.98%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGKPL 346
            MKLVRFLMKLNNETVSIELKNGT+VHGTITGVDISMNTHLKTVKLT+KGKNPVTLDHLSVRGNNIRYYILPDSLNLETLL+EE P+VKPKKPTAG+PL
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDISMNTHLKTVKLTVKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLIEETPKVKPKKPTAGRPL 98

[Close]

BLAST of GT626873 vs. SwissProt
Match: SMD1_MOUSE (Small nuclear ribonucleoprotein Sm D1 OS=Mus musculus GN=Snrpd1 PE=2 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTA 334
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

[Close]

BLAST of GT626873 vs. SwissProt
Match: SMD1_MACFA (Small nuclear ribonucleoprotein Sm D1 OS=Macaca fascicularis GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTA 334
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

[Close]

BLAST of GT626873 vs. SwissProt
Match: SMD1_HUMAN (Small nuclear ribonucleoprotein Sm D1 OS=Homo sapiens GN=SNRPD1 PE=1 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTA 334
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

[Close]

BLAST of GT626873 vs. SwissProt
Match: SMD1_BOVIN (Small nuclear ribonucleoprotein Sm D1 OS=Bos taurus GN=SNRPD1 PE=3 SV=1)

HSP 1 Score: 141.354 bits (355), Expect = 2.990e-33
Identity = 70/94 (74.47%), Postives = 82/94 (87.23%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTA 334
            MKLVRFLMKL++ETV+IELKNGT VHGTITGVD+SMNTHLK VK+TLK + PV L+ LS+RGNNIRY+ILPDSL L+TLLV+  P+VK KK  A
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQVHGTITGVDVSMNTHLKAVKMTLKNREPVQLETLSIRGNNIRYFILPDSLPLDTLLVDVEPKVKSKKREA 94

[Close]

BLAST of GT626873 vs. SwissProt
Match: SMD1_DROME (Probable small nuclear ribonucleoprotein Sm D1 OS=Drosophila melanogaster GN=snRNP69D PE=1 SV=1)

HSP 1 Score: 140.969 bits (354), Expect = 3.905e-33
Identity = 65/96 (67.71%), Postives = 86/96 (89.58%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGK 340
            MKLVRFLMKL++ETV+IELKNGT +HGTITGVD++MNTHLK+V++T+K ++PV L+ LS+RGNNIRY+ILPDSL LETLL+++ P+ K KK  +G+
Sbjct:    1 MKLVRFLMKLSHETVTIELKNGTQIHGTITGVDVAMNTHLKSVRMTIKNRDPVHLETLSIRGNNIRYFILPDSLPLETLLIDDTPKSKTKKKDSGR 96

[Close]

BLAST of GT626873 vs. SwissProt
Match: SMD1_SCHPO (Probable small nuclear ribonucleoprotein Sm D1 OS=Schizosaccharomyces pombe GN=smd1 PE=2 SV=1)

HSP 1 Score: 139.813 bits (351), Expect = 8.699e-33
Identity = 67/91 (73.63%), Postives = 80/91 (87.91%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKK 325
            MKLVRFLMKL NETVSIELKNGTIVHGTIT VD+ MNTHLK VK+T+KG+ PV ++ LS+RGNNIRYYILPDSL L+TLL++++ + K KK
Sbjct:    1 MKLVRFLMKLTNETVSIELKNGTIVHGTITSVDMQMNTHLKAVKMTVKGREPVPVETLSIRGNNIRYYILPDSLPLDTLLIDDSTKPKQKK 91

[Close]

BLAST of GT626873 vs. SwissProt
Match: SMD1_CAEEL (Probable small nuclear ribonucleoprotein Sm D1 OS=Caenorhabditis elegans GN=snr-3 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 2.005e-29
Identity = 63/95 (66.32%), Postives = 77/95 (81.05%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAG 337
            MKLVRFLMKL++ETV+IELKNGT V GTI GVD++MNTHL+ V +T+K K PV LD LS+RGNNIRY ILPD L L+TLL+++ PR K +   AG
Sbjct:    1 MKLVRFLMKLSHETVNIELKNGTQVSGTIMGVDVAMNTHLRAVSMTVKNKEPVKLDTLSIRGNNIRYIILPDPLALDTLLIDDEPRKKARAARAG 95

[Close]

BLAST of GT626873 vs. SwissProt
Match: SMD1_YEAST (Small nuclear ribonucleoprotein Sm D1 OS=Saccharomyces cerevisiae GN=SMD1 PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 3.108e-14
Identity = 49/110 (44.55%), Postives = 61/110 (55.45%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLK---------------------GKNP------VTLDHLSVRGNNIRYYILPDSLNLETLLVEE 301
            MKLV FL KL NE V+IELKNGT V GT+  V   MN  L  VKLTL                      G+ P       +L ++++RGN IR  ILPDSLNL++LLV++
Sbjct:    1 MKLVNFLKKLRNEQVTIELKNGTTVWGTLQSVSPQMNAILTDVKLTLPQPRLNKLNSNGIAMASLYLTGGQQPTASDNIASLQYINIRGNTIRQIILPDSLNLDSLLVDQ 110

[Close]

BLAST of GT626873 vs. SwissProt
Match: LSM10_HUMAN (U7 snRNA-associated Sm-like protein LSm10 OS=Homo sapiens GN=LSM10 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 3.680e-7
Identity = 28/94 (29.79%), Postives = 48/94 (51.06%), Query Frame = 2

Query:   59 LVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGK 340
            L+  L  L     +++L++ ++ HG I  VD  MN  L  V  T +  + V LD L V G N+RY  +PD +N+ + + ++   +   +   GK
Sbjct:   17 LIILLQGLQGRVTTVDLRDESVAHGRIDNVDAFMNIRLAKVTYTDRWGHQVKLDDLFVTGRNVRYVHIPDDVNITSTIEQQLQIIHRVRNFGGK 110

[Close]

BLAST of GT626873 vs. TAIR peptide
Match: AT4G02840.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr4:1264726-1266253 FORWARD LENGTH=116)

HSP 1 Score: 186.422 bits (472), Expect = 8.676e-48
Identity = 91/96 (94.79%), Postives = 94/96 (97.92%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGK 340
            MKLVRFLMKLNNETVSIELKNGTIVHGTITGVD+SMNTHLK VKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVE+ PR+KPKKPTAGK
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGK 96

[Close]

BLAST of GT626873 vs. TAIR peptide
Match: AT3G07590.2 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr3:2423146-2423958 FORWARD LENGTH=114)

HSP 1 Score: 182.956 bits (463), Expect = 9.593e-47
Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGK 340
            MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKTVK++LKGKNPVTLDHLS+RGNNIRYYILPDSLNLETLLVE+ PRVKPKKP AGK
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGK 96

[Close]

BLAST of GT626873 vs. TAIR peptide
Match: AT3G07590.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr3:2423146-2423958 FORWARD LENGTH=114)

HSP 1 Score: 182.956 bits (463), Expect = 9.593e-47
Identity = 88/96 (91.67%), Postives = 94/96 (97.92%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGK 340
            MKLVRFLMKLNNETVSIELKNGT+VHGTITGVD+SMNTHLKTVK++LKGKNPVTLDHLS+RGNNIRYYILPDSLNLETLLVE+ PRVKPKKP AGK
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTVVHGTITGVDVSMNTHLKTVKMSLKGKNPVTLDHLSLRGNNIRYYILPDSLNLETLLVEDTPRVKPKKPVAGK 96

[Close]

BLAST of GT626873 vs. TAIR peptide
Match: AT4G02840.2 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr4:1264726-1266253 FORWARD LENGTH=126)

HSP 1 Score: 178.333 bits (451), Expect = 2.363e-45
Identity = 91/106 (85.85%), Postives = 94/106 (88.68%), Query Frame = 2

Query:   53 MKLVRFLMKLNNETVSIELKNGTIVHGTIT----------GVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAGK 340
            MKLVRFLMKLNNETVSIELKNGTIVHGTIT          GVD+SMNTHLK VKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVE+ PR+KPKKPTAGK
Sbjct:    1 MKLVRFLMKLNNETVSIELKNGTIVHGTITDEYTRFYLNRGVDVSMNTHLKAVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEDTPRIKPKKPTAGK 106

[Close]

BLAST of GT626873 vs. TAIR peptide
Match: AT1G20580.1 (| Symbols: | Small nuclear ribonucleoprotein family protein | chr1:7128979-7130371 FORWARD LENGTH=131)

HSP 1 Score: 50.447 bits (119), Expect = 7.431e-7
Identity = 24/92 (26.09%), Postives = 48/92 (52.17%), Query Frame = 2

Query:   62 VRFLMKLNNETVSIELKNGTIVHGTITGVDISMNTHLKTVKLTLKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEEAPRVKPKKPTAG 337
            V+ L + +   V++ELK+G +  G++   + + N  L+ +  T K      L+H+ +RG+ +R+ ++PD L    +      R+K K  + G
Sbjct:    9 VKLLHEASGHIVTVELKSGELYRGSMIECEDNWNCQLEDITYTAKDGKVSQLEHVFIRGSKVRFMVIPDILKHAPMFKRLDARIKGKSSSLG 100

The following BLAST results are available for this feature:

BLAST of GT626873 vs. TrEMBL
BLAST of GT626873 vs. SwissProt
BLAST of GT626873 vs. TAIR peptide

BLAST of GT626873 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
D7TPE2_VITVI	8.852e-48	85.22	Whole genome shotgun sequence of line PN40024, sca...	[more]
B9S445_RICCO	8.852e-48	97.96	Small nuclear ribonucleoprotein sm d1, putative OS...	[more]
C6TN35_SOYBN	1.156e-47	96.94	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6TBT7_SOYBN	1.510e-47	95.92	Putative uncharacterized protein OS=Glycine max PE...	[more]
C6TFD6_SOYBN	1.972e-47	95.92	Putative uncharacterized protein OS=Glycine max PE...	[more]
C5XWD2_SORBI	2.575e-47	95.92	Putative uncharacterized protein Sb04g024330 OS=So...	[more]
B6SH29_MAIZE	2.575e-47	95.92	Putative uncharacterized protein OS=Zea mays PE=4 ...	[more]
B6TXH2_MAIZE	3.364e-47	95.92	Small nuclear ribonucleoprotein Sm D1 OS=Zea mays ...	[more]
B6T1K6_MAIZE	3.364e-47	95.92	Small nuclear ribonucleoprotein Sm D1 OS=Zea mays ...	[more]
B9H869_POPTR	7.493e-47	93.88	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]

BLAST of GT626873 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 9


Match Name	E-value	Identity	Description
SMD1_MOUSE	2.990e-33	74.47	Small nuclear ribonucleoprotein Sm D1 OS=Mus muscu...	[more]
SMD1_MACFA	2.990e-33	74.47	Small nuclear ribonucleoprotein Sm D1 OS=Macaca fa...	[more]
SMD1_HUMAN	2.990e-33	74.47	Small nuclear ribonucleoprotein Sm D1 OS=Homo sapi...	[more]
SMD1_BOVIN	2.990e-33	74.47	Small nuclear ribonucleoprotein Sm D1 OS=Bos tauru...	[more]
SMD1_DROME	3.905e-33	67.71	Probable small nuclear ribonucleoprotein Sm D1 OS=...	[more]
SMD1_SCHPO	8.699e-33	73.63	Probable small nuclear ribonucleoprotein Sm D1 OS=...	[more]
SMD1_CAEEL	2.005e-29	66.32	Probable small nuclear ribonucleoprotein Sm D1 OS=...	[more]
SMD1_YEAST	3.108e-14	44.55	Small nuclear ribonucleoprotein Sm D1 OS=Saccharom...	[more]
LSM10_HUMAN	3.680e-7	29.79	U7 snRNA-associated Sm-like protein LSm10 OS=Homo ...	[more]

BLAST of GT626873 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 5


Match Name	E-value	Identity	Description
AT4G02840.1	8.676e-48	94.79	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT3G07590.2	9.593e-47	91.67	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT3G07590.1	9.593e-47	91.67	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT4G02840.2	2.363e-45	85.85	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]
AT1G20580.1	7.431e-7	26.09	\| Symbols: \| Small nuclear ribonucleoprotein fami...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001163	Like-Sm ribonucleoprotein (LSM) domain	PFAM	PF01423	LSM	coord: 23..87 score: 6.8
IPR006649	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	SMART	SM00651	no description	coord: 22..87 score: 3.1
IPR010920	Like-Sm ribonucleoprotein (LSM)-related domain	SUPERFAMILY	50182	Sm-like ribonucleoproteins	coord: 20..131 score: 3.8
None	No IPR available	GENE3D	2.30.30.100	no description	coord: 18..97 score: 4.8
None	No IPR available	PANTHER	PTHR23338	SMALL NUCLEAR RIBONUCLEOPROTEIN SM	coord: 18..131 score: 1.2
None	No IPR available	PANTHER	PTHR23338:SF18	SMALL NUCLEAR RIBONUCLEOPROTEIN SM D1	coord: 18..131 score: 1.2
None	No IPR available	SEG	seg	seg	coord: 116..131 score
None	No IPR available	SEG	seg	seg	coord: 11..25 score: NAcoord: 26..40 score
None	No IPR available	SEG	seg	seg	coord: 30..44 score

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT626873 ID=GT626873; Name=GT626873; organism=Lens culinaris; type=EST; length=561bp
CTCCCGCCCCTCCGTGGTTGAACTTCAAAGCTGCTGCTCATTTTCCGCCG
CCATGAAGCTCGTCAGGTTTTTGATGAAATTGAACAACGAAACCGTATCA
ATCGAGCTCAAGAACGGCACAATTGTTCATGGCACCATTACAGGTGTTGA
TATTAGTATGAACACACATTTGAAAACAGTTAAGCTAACACTGAAAGGGA
AAAACCCAGTGACTCTGGATCACCTTAGTGTGAGGGGTAACAACATTCGA
TATTATATCCTTCCCGACAGCTTGAATCTTGAGACTTTGCTGGTTGAAGA
GGCACCTAGGGTCAAGCCTAAGAAGCCAACTGCTGGGAAGCCTTTGGGGC
GTGGACGCGGTCGAGGACGTGGACGCGGTCGTGGCCGTGGTCGTTAAATT
GCAATTTTTGTGCCATATGGTTATATTGTAGGAAGAATTTCTGAGTGGTC
TTGTGGACATCAAAAGAGTGTTCTTGCTTAGTTATGTTGGCTTTGGCCAA
TTGCCATATTTTGAACAGTACTTTCAAGTTCTTATGTATAATTCTTTCCC
TTTCAACCGAT

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR001163	Sm_dom_euk/arc
IPR006649	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type
IPR010920	LSM_dom_sf

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