GT619001
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT619001 vs. TrEMBL
Match: D7TFE4_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_87.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00036912001 PE=4 SV=1) HSP 1 Score: 105.531 bits (262), Expect = 5.310e-21 Identity = 68/146 (46.58%), Postives = 79/146 (54.11%), Query Frame = 1 Query: 235 RGFPSYCLGTTSGSRDSDNDEQICDQ-NKVNGSDVTYTSSNEIDLDEAKSESFRKVK---PDEIPCMPSNIDLDEWSQ-----TESRTASISAHGSSTQSTNSTSRFLSRFSLIPGNIXXXXXXXXXXXXXXPCPDSSASLSIFNN 645 R F S CL SGS SD+D D NK NG + T NE + D+ KS FRKVK PDE+P + SN+ L EW Q T SR S S SSTQS N +SRFLSRFSLIPGNI P SS+S++ NN Sbjct: 24 RVFHSSCLRPPSGSHHSDSDNDSDDHPNKENGCNGPCTDQNETESDQLKSGCFRKVKVEQPDEMPSISSNVGLQEWDQANFTRTSSRAGSSSTRASSTQSLNPSSRFLSRFSLIPGNISFRLSRASSLGSSRAYPVSSSSITSNNN 169
BLAST of GT619001 vs. TrEMBL
Match: B9H061_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_817260 PE=4 SV=1) HSP 1 Score: 104.76 bits (260), Expect = 9.057e-21 Identity = 77/194 (39.69%), Postives = 101/194 (52.06%), Query Frame = 1 Query: 211 RKNRSKSL-RGFPSYCLGTTSGSRDSDNDEQICDQ-NKVN-GSDVTYTSSNEIDLDEAKSESFRKVK---PDEIPCMPSNIDLDEWSQ-----TESRTASISAHGSS-TQSTNSTSRFLSRFSLIPGNIXXXXXXXXXXXXXXPCPDSSASLSIFNNEDELSLH----------NRNEAQQYSGGDLLNRSFVN 726 RK +SK + F S CLGT GSRDS + +++CD NK N + + T+ NEID DE K E + KVK D+ PC+ S+++LDEW+Q T SRT S SA ++ TQS+ SR LSR S IPGN+ S +F+ EDE+ H N NE QQ S DLL S + Sbjct: 24 RKGKSKGRSKVFQSSCLGTPCGSRDSTSGDRVCDDGNKENCEGNASSTNRNEIDSDEVKIECYGKVKVEQSDKTPCISSDVELDEWNQASITNTSSRTGSSSARAAAPTQSSTFPSRLLSRLSFIPGNVSFRLSRAVSLGSSRAYHTHSTGPRMFDGEDEIRHHPQSANSVVDGNGNEIQQIS--DLLATSLAS 215
BLAST of GT619001 vs. TrEMBL
Match: B9S1Q3_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_0867230 PE=4 SV=1) HSP 1 Score: 82.0333 bits (201), Expect = 6.287e-14 Identity = 59/168 (35.12%), Postives = 82/168 (48.81%), Query Frame = 1 Query: 298 QICDQ-NKVNGSDVTYTSSNEIDLDEAKSESFRKVKPDEIP--CMPSNIDLDEWSQTE-----SRTASISAHGSSTQSTNSTSRFLSRFSLIPGNIXXXXXXXXXXXXXXPCPDSSASLSIFNNEDELSLHNR--------NEAQQYSGGDLLNRSFVNPVPIQNHGD 753 Q+CD +K N + + T + +L++AK ES+RKVK ++ C+ SN+DLDEW Q SR S S +S + S S FLSRFS +PGN+ +SS +L + N + + LH R N AQQ S DLL S +N H D Sbjct: 3 QVCDHMSKENEGNASSTGQTKRELEQAKIESYRKVKGEQSDETCVSSNVDLDEWRQASITNAASRVGSSSTRDASGPALTSQSSFLSRFSFVPGNVSFRLSRATSLGSSRGYCNSSTNLQMLNEKKGICLHPRSGNGVIDGNGAQQSS--DLLPASLINRTHRVYHED 168
BLAST of GT619001 vs. TrEMBL
Match: B9MUG9_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_676688 PE=4 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 1.712e-11 Identity = 50/121 (41.32%), Postives = 63/121 (52.07%), Query Frame = 1 Query: 412 IPCMPSNIDLDEWSQ-----TESRTASISAHGSS-TQSTNSTSRFLSRFSLIPGNIXXXXXXXXXXXXXXPCPDSSASLSIFNNEDELSLH----------NRNEAQQYSGGDLLNRSFVN 726 +PC+ S+++LDEW+Q T SRT S SA ++ TQS S SRFLSRFS IPGN+ P S SL + +NED++ H N NE QQ S DL S VN Sbjct: 1 MPCISSDVELDEWNQASITNTSSRTGSSSARAAAPTQSLTSPSRFLSRFSFIPGNVSFRLSRAVSLGSSRGYPIHSTSLRMLDNEDQIRRHPQSASGAVDGNGNETQQSS--DLFATSLVN 119
BLAST of GT619001 vs. TrEMBL
Match: B9RU00_RICCO (Ring finger protein, putative OS=Ricinus communis GN=RCOM_1457960 PE=4 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 7.193e-10 Identity = 63/189 (33.33%), Postives = 81/189 (42.86%), Query Frame = 1 Query: 211 RKNRSKSLRGFPSYCLGTTSGSRDSDNDEQICDQNKVN-----GSDVTYTSSNEIDLDEAKSESFRKVKPDEIPCMPSNIDLDEWSQTE-----SRTASISAHGSSTQSTNSTSRFLSRFSLIPGNIXXXXXXXXXXXXXXPCPDSSASLSIFNNEDELSLHNRNEAQQYSGGDLLNRSFVNPVPIQNH 747 RK R K R F S CLG G+ +DN + +K N S T T S ++ +D K KVK E C+ S+ LDE SQ R S SA +S S S S FLSRFS IPGN+ S SL + N+E+E+ H R+ A G + S + P H Sbjct: 20 RKGRCKGSRVFQSSCLG---GAPSNDNTKMCHRNSKENIGNASPSGQTGTLSGQVKIDCRKV----KVKQSEESCVSSSAGLDECSQASITNRACRIGSSSARAASIPSLTSQSSFLSRFSFIPGNMSFRLNRATSLGSSRAYRIPSTSLQMLNDEEEIQ-HPRS-ANNTDGSETQQISDLQPTTHSQH 199 The following BLAST results are available for this feature:
BLAST of GT619001 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 5
InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT619001 ID=GT619001; Name=GT619001; organism=Lens culinaris; type=EST; length=787bpback to top |