GT621653

EST Overview


Name	GT621653
Unique Name	GT621653
Type	EST
Organism	Lens culinaris (lentil)
Sequence length	479

Libraries


Library Name	Type
LIBEST_025390 LCUSE1NG	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Lens culinaris unigene v1	Lens culinaris unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Lens culinaris unigene v1	2010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl	2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs Swissprot	2010-12-28
KEGG analysis for Lens culinaris unigene v1	2011-01-05
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide	2011-02-03
InterProScan analysis for Lens culinaris unigene v1	2011-01-06

Homology

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BLAST of GT621653 vs. TrEMBL
Match: B9RNX6_RICCO (Chromodomain helicase DNA binding protein, putative OS=Ricinus communis GN=RCOM_0921900 PE=4 SV=1)

HSP 1 Score: 244.973 bits (624), Expect = 1.836e-63
Identity = 117/159 (73.58%), Postives = 132/159 (83.02%), Query Frame = 1

Query:    1 KARTAENAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSPTFTDGVPKEGLRIQDXXXXXXXXXXXXDKVRFASEYPRTPLFSDDILLRYPGLKGERKWKEEHDLLLLRAVLKHGYG 477
            K    +N EP+PLMEGEG++FRVLGFNQNQRAAFVQILMRFGVG++DWKEF SRMKQK+YEEI+DYG LFLSHI E+ITDSP F+DGVPKEGLRIQD            +KV+FASE P  PLF+DDI+LRYPGLK  + WKEEHDLLLLRAVLKHGYG
Sbjct:  941 KRARVDNMEPIPLMEGEGRSFRVLGFNQNQRAAFVQILMRFGVGEYDWKEFASRMKQKSYEEIRDYGILFLSHIVEEITDSPNFSDGVPKEGLRIQDVLVRIAVLLLILEKVKFASEKPGIPLFTDDIVLRYPGLKSGKFWKEEHDLLLLRAVLKHGYG 1099

[Close]

BLAST of GT621653 vs. TrEMBL
Match: D7SUY3_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_8.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00035901001 PE=4 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 5.341e-63
Identity = 118/159 (74.21%), Postives = 132/159 (83.02%), Query Frame = 1

Query:    1 KARTAENAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSPTFTDGVPKEGLRIQDXXXXXXXXXXXXDKVRFASEYPRTPLFSDDILLRYPGLKGERKWKEEHDLLLLRAVLKHGYG 477
            KAR  +N EPLPLMEGEG++FRVLGFNQNQRAAFVQ+LMRFGVG+FDW EFT R+KQKT+EEIKDYGTLFL+HI+EDITDSPTF+DGVPKEGLRI D            DKV+ A E P  PLF DDI+ R+PGLKG R WKEEHDLLLLRAV+KHGYG
Sbjct:  945 KARV-DNMEPLPLMEGEGRSFRVLGFNQNQRAAFVQVLMRFGVGEFDWAEFTPRLKQKTFEEIKDYGTLFLAHISEDITDSPTFSDGVPKEGLRIPDVLVRIAVLLLVRDKVKLALEKPGAPLFEDDIVSRFPGLKGGRHWKEEHDLLLLRAVIKHGYG 1102

[Close]

BLAST of GT621653 vs. TrEMBL
Match: A5BRA6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_043255 PE=4 SV=1)

HSP 1 Score: 230.72 bits (587), Expect = 3.583e-59
Identity = 118/181 (65.19%), Postives = 132/181 (72.93%), Query Frame = 1

Query:    1 KARTAENAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSPTFTDGVPKEGLRIQDXXXXXXXXXXXXD----------------------KVRFASEYPRTPLFSDDILLRYPGLKGERKWKEEHDLLLLRAVLKHGYG 477
            KAR  +N EPLPLMEGEG++FRVLGFNQNQRAAFVQ+LMRFGVG+FDW EFT R+KQKT+EEIKDYGTLFL+HI+EDITDSPTF+DGVPKEGLRI D            D                      KV+ A E P  PLF DDI+ R+PGLKG R WKEEHDLLLLRAV+KHGYG
Sbjct:  206 KARV-DNMEPLPLMEGEGRSFRVLGFNQNQRAAFVQVLMRFGVGEFDWAEFTPRLKQKTFEEIKDYGTLFLAHISEDITDSPTFSDGVPKEGLRIPDVLVRIAVLLLVRDKPSSVRETLLSWHGSFVGKKRKKVKLALEKPGAPLFEDDIVSRFPGLKGGRHWKEEHDLLLLRAVIKHGYG 385

[Close]

BLAST of GT621653 vs. TrEMBL
Match: D7LK56_ARALY (PKL/SSL2 OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_344116 PE=4 SV=1)

HSP 1 Score: 207.608 bits (527), Expect = 3.248e-52
Identity = 96/155 (61.94%), Postives = 121/155 (78.06%), Query Frame = 1

Query:   16 ENAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITD-SPTFTDGVPKEGLRIQDXXXXXXXXXXXXDKVRFASEYPRTPLFSDDILLRYPGLKGERKWKEEHDLLLLRAVLKHGYG 477
            +N+EP PLMEGEG++FRVLGFNQ+QRA FVQ LMR+G G+FDWKEF  R+KQKTY+EI +YG LFL HIAEDI + SPTF+DGVPKEGLRI+D            +KV+F  ++P  P+F+  IL R+PGL+  + WKEEHD +++RAVLKHGYG
Sbjct:  948 DNSEPTPLMEGEGRSFRVLGFNQSQRAIFVQTLMRYGAGNFDWKEFVPRLKQKTYDEINEYGILFLKHIAEDIDENSPTFSDGVPKEGLRIEDVLVRIALLILVQEKVKFVEDHPAKPVFTSRILERFPGLRSGKVWKEEHDKIMIRAVLKHGYG 1102

[Close]

BLAST of GT621653 vs. TrEMBL
Match: A9TI22_PHYPA (SNF2 family DNA-dependent ATPase (Fragment) OS=Physcomitrella patens subsp. patens GN=CHR1504 PE=4 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 5.023e-45
Identity = 92/152 (60.53%), Postives = 105/152 (69.08%), Query Frame = 1

Query:   25 EPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSPTFTDGVPKEGLRIQDXXXXXXXXXXXXDKVRFASEYPRTPLFS-DDILLRYPGLKGERKWKEEHDLLLLRAVLKHGYG 477
            EP PL+EGEG+  R+LGFN  QR+ FV +LMRFG+GDF W EF  R+K KT EEIKDYGTLFLSHIAEDI DSP F+DGVPKEGLRIQD            DKV+  SE P  PLFS    + RY  L+  + WKEEHD  LL A+  HGYG
Sbjct:  971 EPPPLIEGEGRELRILGFNHRQRSIFVNVLMRFGLGDFSWSEFIPRLKPKTPEEIKDYGTLFLSHIAEDINDSPFFSDGVPKEGLRIQDVLVRLAILHLIRDKVKALSEDPSIPLFSPGSHIYRYYSLRNTKVWKEEHDRKLLYAICSHGYG 1122

[Close]

BLAST of GT621653 vs. TrEMBL
Match: A9RX41_PHYPA (SNF2 family DNA-dependent ATPase (Fragment) OS=Physcomitrella patens subsp. patens GN=CHR1512 PE=4 SV=1)

HSP 1 Score: 180.644 bits (457), Expect = 4.252e-44
Identity = 91/153 (59.48%), Postives = 106/153 (69.28%), Query Frame = 1

Query:   25 EPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSPTFTDGVPKEGLRIQDXXXXXXXXXXXXDKVRFASEYPRTPLFSD-DILLRYPGLKGERKWKEEHDLLLLRAVL-KHGYG 477
            EP PLMEGEG+  R+LGFN  QR+ FV +LMRFG+GDF W EF  R+K KT EEIKDYGTLFLSHIAEDI DSP F+DG+PKEGLRIQD            DKV+  +E P  PLFS    + RY  L+  + WKEEHD  LL A+  +HGYG
Sbjct:  962 EPPPLMEGEGRELRILGFNHRQRSVFVNVLMRFGLGDFSWSEFIPRLKPKTPEEIKDYGTLFLSHIAEDINDSPFFSDGIPKEGLRIQDVLVRLAILHLIRDKVKALTEDPAMPLFSQGSHMYRYYSLRNTKVWKEEHDRKLLYAICSRHGYG 1114

[Close]

BLAST of GT621653 vs. TrEMBL
Match: B9HAU9_POPTR (Chromatin remodeling complex subunit (Fragment) OS=Populus trichocarpa GN=CHR911 PE=4 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 8.019e-43
Identity = 94/159 (59.12%), Postives = 106/159 (66.67%), Query Frame = 1

Query:    1 KARTAENAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSPTFTDGVPKEGLRIQDXXXXXXXXXXXXDKVRFASEYPRTPLFSDDILLRYPGLKGERKWKEEHDLLLLRAVLKHGYG 477
            KAR  +N EP+PLMEGEG++FRVLGF QNQRAAFVQILM                          YG LFL+HIAED+TDSP F+DGVPKEGLRIQD            DK RFASE P + LF+DDI+LRYPGLK  + WK+EHD LLL AVLKHGYG
Sbjct:  954 KARV-DNTEPIPLMEGEGRSFRVLGFKQNQRAAFVQILM-------------------------SYGRLFLTHIAEDLTDSPNFSDGVPKEGLRIQDVLVRIAVLLLIRDKARFASENPGSALFTDDIILRYPGLKSGKFWKQEHDSLLLHAVLKHGYG 1086

[Close]

BLAST of GT621653 vs. TrEMBL
Match: B9IL39_POPTR (Chromatin remodeling complex subunit (Fragment) OS=Populus trichocarpa GN=CHR909 PE=4 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 6.788e-42
Identity = 90/159 (56.60%), Postives = 105/159 (66.04%), Query Frame = 1

Query:    1 KARTAENAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSPTFTDGVPKEGLRIQDXXXXXXXXXXXXDKVRFASEYPRTPLFSDDILLRYPGLKGERKWKEEHDLLLLRAVLKHGYG 477
            K    +N EP+PLMEGEG++FRVLGFNQNQRAAFVQILM                          YG LFL+HIAED++DSP F+DGVPKEGLRIQD            DK RFASE P + L++DDI++RYPGLK  + WK+EHD LLL AVLKHGYG
Sbjct:  950 KKGRVDNMEPIPLMEGEGRSFRVLGFNQNQRAAFVQILM-------------------------SYGRLFLTHIAEDLSDSPNFSDGVPKEGLRIQDVLIRIAVLLLIRDKARFASENPGSLLYTDDIMVRYPGLKSGKFWKQEHDSLLLHAVLKHGYG 1083

[Close]

BLAST of GT621653 vs. TrEMBL
Match: C5Z5I1_SORBI (Putative uncharacterized protein Sb10g005630 OS=Sorghum bicolor GN=Sb10g005630 PE=4 SV=1)

HSP 1 Score: 154.836 bits (390), Expect = 2.498e-36
Identity = 75/156 (48.08%), Postives = 98/156 (62.82%), Query Frame = 1

Query:    7 RTAENAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSPTFTDGVPKEGLRIQDXXXXXXXXXXXXDKVRFASEYPRTPLFSDDILLRYPGLKGERKWKEEHDLLLLRAVLKHGY 474
            R + N + +PLMEGEG+  RVLGFN  QRA F+Q L RFG  ++DWKE+  R+K K+ EEI+ Y  L ++H+ EDI DS  F+DGVPKE +R+ D            +KV        T +F + +L  + GL G R WK EHDLLLLR +LKHGY
Sbjct:  756 RKSRNVDSIPLMEGEGRTLRVLGFNHAQRAMFLQTLNRFGFQNYDWKEYLPRLKGKSVEEIQRYAELVMTHLVEDINDSENFSDGVPKEMMRVDDVLVRIANITLIEEKVSATGPGKITSIFPNYLLYEFQGLSGGRIWKAEHDLLLLRGILKHGY 911

[Close]

BLAST of GT621653 vs. TrEMBL
Match: Q6YNJ6_ORYSA (Chromatin-remodeling factor CHD3 OS=Oryza sativa GN=PKL PE=2 SV=1)

HSP 1 Score: 143.28 bits (360), Expect = 7.523e-33
Identity = 73/152 (48.03%), Postives = 94/152 (61.84%), Query Frame = 1

Query:   19 NAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSPTFTDGVPKEGLRIQDXXXXXXXXXXXXDKVRFASEYPRTPLFSDDILLRYPGLKGERKWKEEHDLLLLRAVLKHGY 474
            N + LP MEGEG+A RV GFNQ QR  F+Q LMR+G  ++DWKEFT R+K K+ EEI+ Y  L + H+ EDI DS  + DGVPKE +R  +            +KV    +   T LF   +L  +P L G R WK E DLLLL+A++KHGY
Sbjct:  949 NVDSLPFMEGEGRALRVYGFNQIQRTQFLQTLMRYGFQNYDWKEFTPRLKGKSVEEIQRYAELVMIHLLEDINDSGYYADGVPKE-MRTDETLVRLANISLVEEKVAAMEQGKITKLFPSYLLYEFPSLVGGRVWKAEQDLLLLKALIKHGY 1099

[Close]

BLAST of GT621653 vs. SwissProt
Match: PKL_ARATH (CHD3-type chromatin-remodeling factor PICKLE OS=Arabidopsis thaliana GN=PKL PE=1 SV=1)

HSP 1 Score: 203.371 bits (516), Expect = 4.334e-52
Identity = 95/155 (61.29%), Postives = 119/155 (76.77%), Query Frame = 1

Query:   16 ENAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITD-SPTFTDGVPKEGLRIQDXXXXXXXXXXXXDKVRFASEYPRTPLFSDDILLRYPGLKGERKWKEEHDLLLLRAVLKHGYG 477
            +N EP PLMEGEG++FRVLGFNQ+QRA FVQ LMR+G G+FDWKEF  R+KQKT+EEI +YG LFL HIAE+I + SPTF+DGVPKEGLRI+D            +KV+F  ++P  P+F   IL R+PGL+  + WKEEHD +++RAVLKHGYG
Sbjct:  933 DNLEPTPLMEGEGRSFRVLGFNQSQRAIFVQTLMRYGAGNFDWKEFVPRLKQKTFEEINEYGILFLKHIAEEIDENSPTFSDGVPKEGLRIEDVLVRIALLILVQEKVKFVEDHPGKPVFPSRILERFPGLRSGKIWKEEHDKIMIRAVLKHGYG 1087

[Close]

BLAST of GT621653 vs. SwissProt
Match: CHD3_HUMAN (Chromodomain-helicase-DNA-binding protein 3 OS=Homo sapiens GN=CHD3 PE=1 SV=3)

HSP 1 Score: 63.5438 bits (153), Expect = 5.360e-10
Identity = 42/98 (42.86%), Postives = 57/98 (58.16%), Query Frame = 1

Query:   16 ENAEPLP-LMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSR-----MKQKTYEEIKDYGTLFLSHIAEDITD-SPTFTDGVPKEGLRIQ 288
            E  +PLP L+   G    VLGFN  QR AF+  +MR+G+   D   FT++     ++ KT +E K Y +LF+ H+ E   D S TF DGVP+EGL  Q
Sbjct: 1391 EKDKPLPPLLARVGGNIEVLGFNTRQRKAFLNAVMRWGMPPQD--AFTTQWLVRDLRGKTEKEFKAYVSLFMRHLCEPGADGSETFADGVPREGLSRQ 1486

[Close]

BLAST of GT621653 vs. SwissProt
Match: CHD4_MOUSE (Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus GN=Chd4 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.474e-9
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1

Query:   34 PLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSR-----MKQKTYEEIKDYGTLFLSHIAEDITD-SPTFTDGVPKEGLRIQ 288
            PL+   G    VLGFN  QR AF+  +MR+G+   D   FT++     ++ K+ +E K Y +LF+ H+ E   D + TF DGVP+EGL  Q
Sbjct: 1395 PLLARVGGNIEVLGFNARQRKAFLNAIMRYGMPPQD--AFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREGLSRQ 1483

[Close]

BLAST of GT621653 vs. SwissProt
Match: CHD4_HUMAN (Chromodomain-helicase-DNA-binding protein 4 OS=Homo sapiens GN=CHD4 PE=1 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 3.474e-9
Identity = 37/91 (40.66%), Postives = 53/91 (58.24%), Query Frame = 1

Query:   34 PLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSR-----MKQKTYEEIKDYGTLFLSHIAEDITD-SPTFTDGVPKEGLRIQ 288
            PL+   G    VLGFN  QR AF+  +MR+G+   D   FT++     ++ K+ +E K Y +LF+ H+ E   D + TF DGVP+EGL  Q
Sbjct: 1402 PLLARVGGNIEVLGFNARQRKAFLNAIMRYGMPPQD--AFTTQWLVRDLRGKSEKEFKAYVSLFMRHLCEPGADGAETFADGVPREGLSRQ 1490

[Close]

BLAST of GT621653 vs. SwissProt
Match: CHD3_CAEEL (Chromodomain-helicase-DNA-binding protein 3 homolog OS=Caenorhabditis elegans GN=chd-3 PE=2 SV=2)

HSP 1 Score: 60.4622 bits (145), Expect = 4.538e-9
Identity = 37/101 (36.63%), Postives = 56/101 (55.45%), Query Frame = 1

Query:    1 KARTAENAEPLP-LMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSR---MKQKTYEEIKDYGTLFLSHIAEDITD-SPTFTDGVPKEGLRIQ 288
            + R  E +E LP L+        VLGFN  QR AF   +MR+G+   D  + + +   ++ K+ +  K Y +LF+ H+ E + D S +F DGVP+EGL  Q
Sbjct: 1288 RRRREERSEKLPPLLAKVNGQIEVLGFNPRQRKAFYNAVMRWGMPPQDLTQSSWQVRDLRNKSEKVFKAYSSLFMRHLCEPVVDNSDSFMDGVPREGLNRQ 1388

[Close]

BLAST of GT621653 vs. SwissProt
Match: CHD5_HUMAN (Chromodomain-helicase-DNA-binding protein 5 OS=Homo sapiens GN=CHD5 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 2.252e-8
Identity = 36/97 (37.11%), Postives = 55/97 (56.70%), Query Frame = 1

Query:   13 AENAEPLP-LMEGEGKAFRVLGFNQNQRAAFVQILMRFGV---GDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITD-SPTFTDGVPKEGLRIQ 288
            ++  +PLP L+   G    VLGFN  QR AF+  +MR+G+     F+       ++ K+ +E + Y +LF+ H+ E   D + TF DGVP+EGL  Q
Sbjct: 1402 SDRDKPLPPLLARVGGNIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEKEFRAYVSLFMRHLCEPGADGAETFADGVPREGLSRQ 1498

[Close]

BLAST of GT621653 vs. SwissProt
Match: CHDM_DROME (Chromodomain-helicase-DNA-binding protein Mi-2 homolog OS=Drosophila melanogaster GN=Mi-2 PE=1 SV=2)

HSP 1 Score: 56.9954 bits (136), Expect = 5.017e-8
Identity = 33/89 (37.08%), Postives = 49/89 (55.06%), Query Frame = 1

Query:   34 PLMEGEGKAFRVLGFNQNQRAAFVQILMRFGV---GDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITD-SPTFTDGVPKEGLRIQ 288
            PL+   G    VLGFN  QR +F+  +MR+G+     F+ +     ++ K+    K Y +LF+ H+ E   D + TF DGVP+EGL  Q
Sbjct: 1397 PLLARVGGNIEVLGFNARQRKSFLNAIMRYGMPPQDAFNSQWLVRDLRGKSERNFKAYVSLFMRHLCEPGADNAETFADGVPREGLSRQ 1485

[Close]

BLAST of GT621653 vs. TAIR peptide
Match: AT2G25170.1 (| Symbols: PKL, GYM, CHD3, CHR6, SSL2 | chromatin remodeling factor CHD3 (PICKLE) | chr2:10714411-10723763 FORWARD LENGTH=1384)

HSP 1 Score: 203.371 bits (516), Expect = 5.027e-53
Identity = 95/155 (61.29%), Postives = 119/155 (76.77%), Query Frame = 1

Query:   16 ENAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITD-SPTFTDGVPKEGLRIQDXXXXXXXXXXXXDKVRFASEYPRTPLFSDDILLRYPGLKGERKWKEEHDLLLLRAVLKHGYG 477
            +N EP PLMEGEG++FRVLGFNQ+QRA FVQ LMR+G G+FDWKEF  R+KQKT+EEI +YG LFL HIAE+I + SPTF+DGVPKEGLRI+D            +KV+F  ++P  P+F   IL R+PGL+  + WKEEHD +++RAVLKHGYG
Sbjct:  933 DNLEPTPLMEGEGRSFRVLGFNQSQRAIFVQTLMRYGAGNFDWKEFVPRLKQKTFEEINEYGILFLKHIAEEIDENSPTFSDGVPKEGLRIEDVLVRIALLILVQEKVKFVEDHPGKPVFPSRILERFPGLRSGKIWKEEHDKIMIRAVLKHGYG 1087

[Close]

BLAST of GT621653 vs. TAIR peptide
Match: AT4G31900.2 (| Symbols: PKR2 | chromatin remodeling factor, putative | chr4:15431528-15438443 FORWARD LENGTH=1161)

HSP 1 Score: 142.124 bits (357), Expect = 1.375e-34
Identity = 71/168 (42.26%), Postives = 101/168 (60.12%), Query Frame = 1

Query:    1 KARTAENAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSPT---------FTDGVPKEGLRIQDXXXXXXXXXXXXDKVRFASEYPRTPLFSDDILLRYPGLKGERKWKEEHDLLLLRAVLKHGYG 477
            + R  +N+E +PLMEGEG+   VLGFN+ +R  F++   R+G G+FDWKEF + +  KTY+EI  YG LFL HIAE+ TD+ T         + DGVPKEG+   +            +K +F   +P  P+FS+ ++ +Y  L+     KEEHD +L+ AV KHGYG
Sbjct:  823 RKRARDNSEEIPLMEGEGRYLMVLGFNETERDIFLRTFKRYGAGNFDWKEFVNPLYMKTYDEINKYGILFLKHIAENPTDNSTNFKVITAMVYADGVPKEGISSDELLVSMTFMMLVKEKCQFLDNHPTAPVFSNYVISKY-NLRNGAFSKEEHDRILIPAVSKHGYG 989

[Close]

BLAST of GT621653 vs. TAIR peptide
Match: AT4G31900.1 (| Symbols: PKR2 | chromatin remodeling factor, putative | chr4:15431528-15438443 FORWARD LENGTH=1202)

HSP 1 Score: 142.124 bits (357), Expect = 1.375e-34
Identity = 71/168 (42.26%), Postives = 101/168 (60.12%), Query Frame = 1

Query:    1 KARTAENAEPLPLMEGEGKAFRVLGFNQNQRAAFVQILMRFGVGDFDWKEFTSRMKQKTYEEIKDYGTLFLSHIAEDITDSPT---------FTDGVPKEGLRIQDXXXXXXXXXXXXDKVRFASEYPRTPLFSDDILLRYPGLKGERKWKEEHDLLLLRAVLKHGYG 477
            + R  +N+E +PLMEGEG+   VLGFN+ +R  F++   R+G G+FDWKEF + +  KTY+EI  YG LFL HIAE+ TD+ T         + DGVPKEG+   +            +K +F   +P  P+FS+ ++ +Y  L+     KEEHD +L+ AV KHGYG
Sbjct:  864 RKRARDNSEEIPLMEGEGRYLMVLGFNETERDIFLRTFKRYGAGNFDWKEFVNPLYMKTYDEINKYGILFLKHIAENPTDNSTNFKVITAMVYADGVPKEGISSDELLVSMTFMMLVKEKCQFLDNHPTAPVFSNYVISKY-NLRNGAFSKEEHDRILIPAVSKHGYG 1030

The following BLAST results are available for this feature:

BLAST of GT621653 vs. TrEMBL
BLAST of GT621653 vs. SwissProt
BLAST of GT621653 vs. TAIR peptide

BLAST of GT621653 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 10


Match Name	E-value	Identity	Description
B9RNX6_RICCO	1.836e-63	73.58	Chromodomain helicase DNA binding protein, putativ...	[more]
D7SUY3_VITVI	5.341e-63	74.21	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5BRA6_VITVI	3.583e-59	65.19	Putative uncharacterized protein OS=Vitis vinifera...	[more]
D7LK56_ARALY	3.248e-52	61.94	PKL/SSL2 OS=Arabidopsis lyrata subsp. lyrata GN=AR...	[more]
A9TI22_PHYPA	5.023e-45	60.53	SNF2 family DNA-dependent ATPase (Fragment) OS=Phy...	[more]
A9RX41_PHYPA	4.252e-44	59.48	SNF2 family DNA-dependent ATPase (Fragment) OS=Phy...	[more]
B9HAU9_POPTR	8.019e-43	59.12	Chromatin remodeling complex subunit (Fragment) OS...	[more]
B9IL39_POPTR	6.788e-42	56.60	Chromatin remodeling complex subunit (Fragment) OS...	[more]
C5Z5I1_SORBI	2.498e-36	48.08	Putative uncharacterized protein Sb10g005630 OS=So...	[more]
Q6YNJ6_ORYSA	7.523e-33	48.03	Chromatin-remodeling factor CHD3 OS=Oryza sativa G...	[more]

BLAST of GT621653 vs. SwissProt
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Swissprot)
Total hits: 7


Match Name	E-value	Identity	Description
PKL_ARATH	4.334e-52	61.29	CHD3-type chromatin-remodeling factor PICKLE OS=Ar...	[more]
CHD3_HUMAN	5.360e-10	42.86	Chromodomain-helicase-DNA-binding protein 3 OS=Hom...	[more]
CHD4_MOUSE	3.474e-9	40.66	Chromodomain-helicase-DNA-binding protein 4 OS=Mus...	[more]
CHD4_HUMAN	3.474e-9	40.66	Chromodomain-helicase-DNA-binding protein 4 OS=Hom...	[more]
CHD3_CAEEL	4.538e-9	36.63	Chromodomain-helicase-DNA-binding protein 3 homolo...	[more]
CHD5_HUMAN	2.252e-8	37.11	Chromodomain-helicase-DNA-binding protein 5 OS=Hom...	[more]
CHDM_DROME	5.017e-8	37.08	Chromodomain-helicase-DNA-binding protein Mi-2 hom...	[more]

BLAST of GT621653 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 3


Match Name	E-value	Identity	Description
AT2G25170.1	5.027e-53	61.29	\| Symbols: PKL, GYM, CHD3, CHR6, SSL2 \| chromatin ...	[more]
AT4G31900.2	1.375e-34	42.26	\| Symbols: PKR2 \| chromatin remodeling factor, put...	[more]
AT4G31900.1	1.375e-34	42.26	\| Symbols: PKR2 \| chromatin remodeling factor, put...	[more]

InterPro

Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009462	Domain of unknown function DUF1086	PFAM	PF06461	DUF1086	coord: 4..126 score: 3.9
None	No IPR available	PANTHER	PTHR10799	ATP-DEPENDENT HELICASE SMARCA (SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN A)-RELATED	coord: 1..112 score: 6.3
None	No IPR available	PANTHER	PTHR10799:SF64	CHROMODOMAIN HELICASE DNA BINDING PROTEIN	coord: 1..112 score: 6.3
None	No IPR available	SEG	seg	seg	coord: 98..109 score
None	No IPR available	SEG	seg	seg	coord: 40..51 score

Properties


Property Name	Value
Singlet in analysis	Lens culinaris unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>GT621653 ID=GT621653; Name=GT621653; organism=Lens culinaris; type=EST; length=479bp
AAAGCACGCACAGCGGAAAACGCAGAGCCACTTCCTCTGATGGAAGGTGA
AGGAAAAGCATTCAGAGTACTTGGTTTTAATCAAAATCAAAGGGCTGCCT
TTGTGCAAATTTTGATGAGGTTTGGGGTTGGTGATTTTGATTGGAAGGAG
TTCACTTCCCGCATGAAACAGAAGACTTATGAAGAAATCAAAGATTATGG
AACCCTTTTCTTGTCCCACATTGCGGAAGATATAACTGATTCCCCTACAT
TCACAGATGGTGTTCCGAAAGAAGGGCTCCGAATCCAAGATGTACTTGTT
AGGATTGCAGTCCTGCTCTTATTAAGGGACAAAGTGAGGTTTGCATCGGA
ATATCCTCGAACTCCACTGTTTTCAGATGACATCTTATTACGTTATCCGG
GTTTGAAGGGTGAAAGGAAGTGGAAGGAGGAGCATGATCTTTTGCTACTG
CGTGCTGTGTTAAAGCATGGGTATGGAAG

Annotated Terms

The following terms have been associated with this EST:

Vocabulary: **INTERPRO**
Term	Definition
IPR009462	CHD_II_SANT-like

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