GT619192

EST Overview
NameGT619192
Unique NameGT619192
TypeEST
OrganismLens culinaris (lentil)
Sequence length767
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide2011-02-03
Homology
BLAST of GT619192 vs. TrEMBL
Match: D7U5B6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024104001 PE=4 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 2.844e-24
Identity = 88/260 (33.85%), Postives = 123/260 (47.31%), Query Frame = 2
Query:    2 WVEFLRGLDNSKEVPVDCSAVKMLVAHSCDKLNADISSRENASPLTIKSFTDCHHLLNLLTLMSD--VNTGSFSHIASCIFNLERLLVNALVYFQSTVYRDYYCEYLRLFVSCRKALRYILMGL-SEKTDTIRSSPDSVISESSNPVLWLSKSLTVIAGFQEVFSAENI-LFKSQMFSLMDHTSSALLGIGKHQYIHAFCLDKEAEIPCEENSDHKISHAENHLLSSTQYVDSSK-LEALKCLTLMAQNMKEQMQNLLAS 766
            W E L   DN            + V  S  KL  + +  + A  L    FT C   LNLL  M    +N+ SFS   +CI NLER +V  L+     +    + E  RLF+SCR+ L++++M    EK +  +SS  S+  E S PVLWL KS++V+ G Q  FS +    F+   FSLMD TS   L   K Q+ H                        +HL  +    DSSK ++A K + L+A+ +KEQ +NLL S
Sbjct: 1016 WQEVLSAFDN------------LSVVVSGAKLPTEFNEEKKAFLLQSMEFTACQSSLNLLCWMPKGYLNSRSFSLYTTCILNLERFVVCRLIKCHCALCSHNHYELYRLFLSCRRTLKHLIMAFCEEKMEASQSSLTSIFPEVSFPVLWLLKSVSVMVGLQHTFSEDRASQFRYMSFSLMDQTSYVFLMFSKSQFSHV-----------------------SHLTETDPCSDSSKAVDAWKNVVLVAEALKEQTENLLIS 1240          
BLAST of GT619192 vs. TrEMBL
Match: B9STD4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0660980 PE=4 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.460e-20
Identity = 82/265 (30.94%), Postives = 125/265 (47.17%), Query Frame = 2
Query:   14 LRGLDNSKEVPVDCSAVKMLVAHSCDKLNADISSRENASPLTIK------------SFTDCHHLLNLLTLMSD--VNTGSFSHIASCIFNLERLLVNALVYFQSTVYRDYYCEYLRLFVSCRKALRYILMGLSE-KTDTIRSSPDSVISESSNPVLWLSKSLTVIAGFQEVFSAENILFKSQM-FSLMDHTSSALLGIGKHQYIHAFCLDKEAEIPCEENSDHKISHAENHLLSSTQYVDSSKLEALKCLTLMAQNMKEQMQNLL 760
            +    N +EV     ++ M +  S      ++S     SPL+ K             F  C  LL LL  +    +N+ SFS   + + NLER +++++      +      E LRL +SCR+AL+Y++M LSE KT T  SS   V+SE    VLWL KS+ ++ G QE FS ++     +M FSLMDHTS   L + KH    A       E   E+ +   +        S ++       +  K + +MA+++KEQ Q LL
Sbjct: 1149 INSFPNWQEVLSTVGSLPMAILESKHVTFDELSEERPISPLSSKIAADNSMESPDMKFRACQSLLKLLCWLPKGYMNSRSFSIYVTYLLNLERYIISSISECTGAMSSYNLFELLRLLISCRRALKYLVMALSEEKTITSHSSVTPVLSEGLFSVLWLFKSVFMVVGLQETFSKDDSDEIGEMIFSLMDHTSYLFLELSKHSCTCAIRSIISKEPHKEQTNVRSVQEVSTSNESDSRVDSWGSDKGWKNILVMAESLKEQTQGLL 1413          
BLAST of GT619192 vs. TrEMBL
Match: D7MC82_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_913468 PE=4 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 1.121e-12
Identity = 71/247 (28.74%), Postives = 112/247 (45.34%), Query Frame = 2
Query:   44 PVDCSAVKMLVAHSCDKLNADISSRE----NASPLTIKSFTDCHHLLNLLTLMSD--VNTGSFSHIASCIFNLERLLVNALVYFQSTVYRDYYCEYLRLFVSCRKALRYILMGLSEKTDTIRSSPDSVISESSNPVLWLSKSLTVIAGFQEVFSAENILFKSQ--MFSLMDHTSSALLGIGKHQYIHAFCLDKEAEIPCEENSD--------HKISHAENHLLSSTQYVDSSKLEALKCLTLMAQNM 736
            P D S V +L+  S   L+  + S+     + S L  + FT C +LLNLL  M    +N  SF   AS + +LER +V +++   + + R        LF++ RK L+ I M      D +  + +  +S+SS    WL KS   +   Q  F   N   KS+  +FSLMDHTS   L + K+Q+  A  L  E  I  E +            ++     LL++ +     +  A KC +L+   +
Sbjct: 1103 PSDWSEVLILLERSIANLSGKLQSKAFLEAHVSQLDNRKFTACQNLLNLLGAMPKEYMNKKSFQLYASYVLDLERFIVFSMLRCLNKLSRGDMQNLFSLFITSRKTLKSISM---ISCDKVLGATELPLSDSSLLASWLFKSAQAVVTCQVRFR-NNFTGKSRDALFSLMDHTSYMFLTVSKYQFSKALPLSDEQLISAEISEGTGQGNLIIESLTEQAETLLNALRATFRDEKTAFKCESLILNKL 1345          
BLAST of GT619192 vs. TrEMBL
Match: Q9SZW8_ARATH (Putative uncharacterized protein AT4g30150 OS=Arabidopsis thaliana GN=F6G3.180 PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 6.800e-10
Identity = 69/247 (27.94%), Postives = 110/247 (44.53%), Query Frame = 2
Query:   44 PVDCSAVKML----VAHSCDKLNADISSRENASPLTIKSFTDCHHLLNLLTLMSD--VNTGSFSHIASCIFNLERLLVNALVYFQSTVYRDYYCEYLRLFVSCRKALRYILMGLSEKTDTIRSSPDSVISESSNPVLWLSKSLTVIAGFQEVFSAENILFKSQ--MFSLMDHTSSALLGIGKHQYIHAFCLDKEAEIPCEENSD--------HKISHAENHLLSSTQYVDSSKLEALKCLTLMAQNM 736
            P D S V +L    +A+   KL ++     + S L  + FT C +LLNLL +M     N  SF   AS + +LER +V +++   + +          LF +CRK L+ I M   +K       P   +S+SS    WL KS    A   +V    ++  K++  +FSLMDHTS   L + K+Q+  A     E  I  E +            ++     LL++ +     +  A KC +L+   +
Sbjct: 1146 PSDWSEVLILLESSIANLSGKLKSEAFLEAHVSLLDNRKFTACQNLLNLLGVMPKEYTNKKSFQLYASYVLDLERFIVFSMLRCLNKLSCGDMQNLFSLFSTCRKTLKSIAMISCDKVLGATKLP---LSDSSLLASWLFKSAQ--AATCQVRFRNDVTGKARDALFSLMDHTSYMFLTVSKYQFSKALPFSDEKLISSEISEGTGQANLIIENLTEQAETLLNALRATFRDEKTAFKCESLILNKL 1387          
BLAST of GT619192 vs. TrEMBL
Match: B9HRB4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_767326 PE=4 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 1.978e-9
Identity = 64/199 (32.16%), Postives = 91/199 (45.73%), Query Frame = 2
Query:    2 WVEFLRGLDNS------KEVPVDCSAVKMLVAHSCDKLNADISSRENASPLTIKSFTDCHHLLNLLTLMSD--VNTGSFSHIASCIFNLERLLVNALVYFQSTVYRDYYCEYLRLFVSCRKALRYILMG-----LSEKTDTIRSSPDSVISES----SNPVLWLS------KSLTVIAGFQE------VFSAENILFKS 511
            W E L  L+NS      K    D  A    ++H   ++ ADIS       L I  FT C  LL LL  M    +N+ SFS   +C  N ER ++  L+    + +     E LRL V+CRKAL+Y++M      ++EK  T   + D    +S    SNP L  S      KS+ +IA   E      + S ++ LFK+
Sbjct:  256 WQEDLSALENSYVVSGRKSSTCDEIAEGKPISHLLSEMPADISRE-----LAIMKFTACQSLLRLLCWMPKGYINSKSFSLYVTCTLNPERFVIGHLLECGDSFFSRKQYELLRLLVTCRKALKYLIMAYFDSIIAEKPCTELPNSDVAQEQSSVNKSNPCLDTSNDFESWKSVIIIAESLEEQTQDLIISLKDALFKN 449          
BLAST of GT619192 vs. TAIR peptide
Match: AT4G30150.1 (| Symbols: | CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:14742452-14749764 FORWARD LENGTH=2009)

HSP 1 Score: 68.5514 bits (166), Expect = 4.442e-12
Identity = 69/247 (27.94%), Postives = 110/247 (44.53%), Query Frame = 2
Query:   44 PVDCSAVKML----VAHSCDKLNADISSRENASPLTIKSFTDCHHLLNLLTLMSD--VNTGSFSHIASCIFNLERLLVNALVYFQSTVYRDYYCEYLRLFVSCRKALRYILMGLSEKTDTIRSSPDSVISESSNPVLWLSKSLTVIAGFQEVFSAENILFKSQ--MFSLMDHTSSALLGIGKHQYIHAFCLDKEAEIPCEENSD--------HKISHAENHLLSSTQYVDSSKLEALKCLTLMAQNM 736
            P D S V +L    +A+   KL ++     + S L  + FT C +LLNLL +M     N  SF   AS + +LER +V +++   + +          LF +CRK L+ I M   +K       P   +S+SS    WL KS    A   +V    ++  K++  +FSLMDHTS   L + K+Q+  A     E  I  E +            ++     LL++ +     +  A KC +L+   +
Sbjct: 1146 PSDWSEVLILLESSIANLSGKLKSEAFLEAHVSLLDNRKFTACQNLLNLLGVMPKEYTNKKSFQLYASYVLDLERFIVFSMLRCLNKLSCGDMQNLFSLFSTCRKTLKSIAMISCDKVLGATKLP---LSDSSLLASWLFKSAQ--AATCQVRFRNDVTGKARDALFSLMDHTSYMFLTVSKYQFSKALPFSDEKLISSEISEGTGQANLIIENLTEQAETLLNALRATFRDEKTAFKCESLILNKL 1387          
The following BLAST results are available for this feature:
BLAST of GT619192 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 5
Match NameE-valueIdentityDescription
D7U5B6_VITVI2.844e-2433.85Whole genome shotgun sequence of line PN40024, sca... [more]
B9STD4_RICCO1.460e-2030.94Putative uncharacterized protein OS=Ricinus commun... [more]
D7MC82_ARALY1.121e-1228.74Putative uncharacterized protein OS=Arabidopsis ly... [more]
Q9SZW8_ARATH6.800e-1027.94Putative uncharacterized protein AT4g30150 OS=Arab... [more]
B9HRB4_POPTR1.978e-932.16Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
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BLAST of GT619192 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide)
Total hits: 1
Match NameE-valueIdentityDescription
AT4G30150.14.442e-1227.94| Symbols: | CONTAINS InterPro DOMAIN/s: Nucleola... [more]
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Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT619192 ID=GT619192; Name=GT619192; organism=Lens culinaris; type=EST; length=767bp
CTGGGTTGAGTTTTTAAGGGGCCTCGACAACTCAAAAGAGGTTCCAGTTG
ATTGTTCTGCAGTTAAAATGCTGGTCGCTCATTCATGTGATAAGCTTAAT
GCAGATATCAGCAGCAGAGAAAATGCCTCCCCTCTTACCATCAAGAGTTT
CACAGACTGCCATCATTTGCTTAATCTCTTAACTTTGATGTCAGATGTCA
ATACAGGATCATTTTCACATATTGCATCTTGTATTTTCAACCTTGAAAGG
CTTCTTGTAAATGCCTTGGTATATTTTCAGAGCACAGTGTACCGGGACTA
TTATTGTGAGTATTTGAGGTTATTTGTCTCTTGCCGGAAGGCCTTAAGAT
ATATATTAATGGGTTTAAGTGAGAAGACAGACACCATACGCTCCTCACCA
GACTCAGTTATTTCTGAAAGTTCGAATCCTGTTTTGTGGCTTTCAAAGTC
ATTAACTGTGATTGCTGGATTTCAAGAGGTATTCTCAGCAGAAAATATTC
TATTTAAATCTCAGATGTTTTCTTTAATGGATCACACTTCATCTGCCTTG
TTGGGCATTGGAAAACATCAATATATCCATGCTTTTTGTTTAGATAAAGA
AGCTGAGATACCTTGTGAAGAGAACTCTGATCATAAAATTAGCCATGCAG
AGAATCATTTGCTTTCATCTACTCAGTATGTAGATTCTTCCAAGCTTGAG
GCATTGAAGTGTTTAACCTTAATGGCTCAGAATATGAAAGAGCAGATGCA
AAATTTGCTTGCATCTC
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