GT619192
EST Overview
Libraries
Unigenes
This EST is part of the following unigenes:
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of GT619192 vs. TrEMBL
Match: D7U5B6_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_38.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00024104001 PE=4 SV=1) HSP 1 Score: 116.316 bits (290), Expect = 2.844e-24 Identity = 88/260 (33.85%), Postives = 123/260 (47.31%), Query Frame = 2 Query: 2 WVEFLRGLDNSKEVPVDCSAVKMLVAHSCDKLNADISSRENASPLTIKSFTDCHHLLNLLTLMSD--VNTGSFSHIASCIFNLERLLVNALVYFQSTVYRDYYCEYLRLFVSCRKALRYILMGL-SEKTDTIRSSPDSVISESSNPVLWLSKSLTVIAGFQEVFSAENI-LFKSQMFSLMDHTSSALLGIGKHQYIHAFCLDKEAEIPCEENSDHKISHAENHLLSSTQYVDSSK-LEALKCLTLMAQNMKEQMQNLLAS 766 W E L DN + V S KL + + + A L FT C LNLL M +N+ SFS +CI NLER +V L+ + + E RLF+SCR+ L++++M EK + +SS S+ E S PVLWL KS++V+ G Q FS + F+ FSLMD TS L K Q+ H +HL + DSSK ++A K + L+A+ +KEQ +NLL S Sbjct: 1016 WQEVLSAFDN------------LSVVVSGAKLPTEFNEEKKAFLLQSMEFTACQSSLNLLCWMPKGYLNSRSFSLYTTCILNLERFVVCRLIKCHCALCSHNHYELYRLFLSCRRTLKHLIMAFCEEKMEASQSSLTSIFPEVSFPVLWLLKSVSVMVGLQHTFSEDRASQFRYMSFSLMDQTSYVFLMFSKSQFSHV-----------------------SHLTETDPCSDSSKAVDAWKNVVLVAEALKEQTENLLIS 1240
BLAST of GT619192 vs. TrEMBL
Match: B9STD4_RICCO (Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0660980 PE=4 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.460e-20 Identity = 82/265 (30.94%), Postives = 125/265 (47.17%), Query Frame = 2 Query: 14 LRGLDNSKEVPVDCSAVKMLVAHSCDKLNADISSRENASPLTIK------------SFTDCHHLLNLLTLMSD--VNTGSFSHIASCIFNLERLLVNALVYFQSTVYRDYYCEYLRLFVSCRKALRYILMGLSE-KTDTIRSSPDSVISESSNPVLWLSKSLTVIAGFQEVFSAENILFKSQM-FSLMDHTSSALLGIGKHQYIHAFCLDKEAEIPCEENSDHKISHAENHLLSSTQYVDSSKLEALKCLTLMAQNMKEQMQNLL 760 + N +EV ++ M + S ++S SPL+ K F C LL LL + +N+ SFS + + NLER +++++ + E LRL +SCR+AL+Y++M LSE KT T SS V+SE VLWL KS+ ++ G QE FS ++ +M FSLMDHTS L + KH A E E+ + + S ++ + K + +MA+++KEQ Q LL Sbjct: 1149 INSFPNWQEVLSTVGSLPMAILESKHVTFDELSEERPISPLSSKIAADNSMESPDMKFRACQSLLKLLCWLPKGYMNSRSFSIYVTYLLNLERYIISSISECTGAMSSYNLFELLRLLISCRRALKYLVMALSEEKTITSHSSVTPVLSEGLFSVLWLFKSVFMVVGLQETFSKDDSDEIGEMIFSLMDHTSYLFLELSKHSCTCAIRSIISKEPHKEQTNVRSVQEVSTSNESDSRVDSWGSDKGWKNILVMAESLKEQTQGLL 1413
BLAST of GT619192 vs. TrEMBL
Match: D7MC82_ARALY (Putative uncharacterized protein OS=Arabidopsis lyrata subsp. lyrata GN=ARALYDRAFT_913468 PE=4 SV=1) HSP 1 Score: 77.7962 bits (190), Expect = 1.121e-12 Identity = 71/247 (28.74%), Postives = 112/247 (45.34%), Query Frame = 2 Query: 44 PVDCSAVKMLVAHSCDKLNADISSRE----NASPLTIKSFTDCHHLLNLLTLMSD--VNTGSFSHIASCIFNLERLLVNALVYFQSTVYRDYYCEYLRLFVSCRKALRYILMGLSEKTDTIRSSPDSVISESSNPVLWLSKSLTVIAGFQEVFSAENILFKSQ--MFSLMDHTSSALLGIGKHQYIHAFCLDKEAEIPCEENSD--------HKISHAENHLLSSTQYVDSSKLEALKCLTLMAQNM 736 P D S V +L+ S L+ + S+ + S L + FT C +LLNLL M +N SF AS + +LER +V +++ + + R LF++ RK L+ I M D + + + +S+SS WL KS + Q F N KS+ +FSLMDHTS L + K+Q+ A L E I E + ++ LL++ + + A KC +L+ + Sbjct: 1103 PSDWSEVLILLERSIANLSGKLQSKAFLEAHVSQLDNRKFTACQNLLNLLGAMPKEYMNKKSFQLYASYVLDLERFIVFSMLRCLNKLSRGDMQNLFSLFITSRKTLKSISM---ISCDKVLGATELPLSDSSLLASWLFKSAQAVVTCQVRFR-NNFTGKSRDALFSLMDHTSYMFLTVSKYQFSKALPLSDEQLISAEISEGTGQGNLIIESLTEQAETLLNALRATFRDEKTAFKCESLILNKL 1345
BLAST of GT619192 vs. TrEMBL
Match: Q9SZW8_ARATH (Putative uncharacterized protein AT4g30150 OS=Arabidopsis thaliana GN=F6G3.180 PE=1 SV=1) HSP 1 Score: 68.5514 bits (166), Expect = 6.800e-10 Identity = 69/247 (27.94%), Postives = 110/247 (44.53%), Query Frame = 2 Query: 44 PVDCSAVKML----VAHSCDKLNADISSRENASPLTIKSFTDCHHLLNLLTLMSD--VNTGSFSHIASCIFNLERLLVNALVYFQSTVYRDYYCEYLRLFVSCRKALRYILMGLSEKTDTIRSSPDSVISESSNPVLWLSKSLTVIAGFQEVFSAENILFKSQ--MFSLMDHTSSALLGIGKHQYIHAFCLDKEAEIPCEENSD--------HKISHAENHLLSSTQYVDSSKLEALKCLTLMAQNM 736 P D S V +L +A+ KL ++ + S L + FT C +LLNLL +M N SF AS + +LER +V +++ + + LF +CRK L+ I M +K P +S+SS WL KS A +V ++ K++ +FSLMDHTS L + K+Q+ A E I E + ++ LL++ + + A KC +L+ + Sbjct: 1146 PSDWSEVLILLESSIANLSGKLKSEAFLEAHVSLLDNRKFTACQNLLNLLGVMPKEYTNKKSFQLYASYVLDLERFIVFSMLRCLNKLSCGDMQNLFSLFSTCRKTLKSIAMISCDKVLGATKLP---LSDSSLLASWLFKSAQ--AATCQVRFRNDVTGKARDALFSLMDHTSYMFLTVSKYQFSKALPFSDEKLISSEISEGTGQANLIIENLTEQAETLLNALRATFRDEKTAFKCESLILNKL 1387
BLAST of GT619192 vs. TrEMBL
Match: B9HRB4_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_767326 PE=4 SV=1) HSP 1 Score: 67.0106 bits (162), Expect = 1.978e-9 Identity = 64/199 (32.16%), Postives = 91/199 (45.73%), Query Frame = 2 Query: 2 WVEFLRGLDNS------KEVPVDCSAVKMLVAHSCDKLNADISSRENASPLTIKSFTDCHHLLNLLTLMSD--VNTGSFSHIASCIFNLERLLVNALVYFQSTVYRDYYCEYLRLFVSCRKALRYILMG-----LSEKTDTIRSSPDSVISES----SNPVLWLS------KSLTVIAGFQE------VFSAENILFKS 511 W E L L+NS K D A ++H ++ ADIS L I FT C LL LL M +N+ SFS +C N ER ++ L+ + + E LRL V+CRKAL+Y++M ++EK T + D +S SNP L S KS+ +IA E + S ++ LFK+ Sbjct: 256 WQEDLSALENSYVVSGRKSSTCDEIAEGKPISHLLSEMPADISRE-----LAIMKFTACQSLLRLLCWMPKGYINSKSFSLYVTCTLNPERFVIGHLLECGDSFFSRKQYELLRLLVTCRKALKYLIMAYFDSIIAEKPCTELPNSDVAQEQSSVNKSNPCLDTSNDFESWKSVIIIAESLEEQTQDLIISLKDALFKN 449
BLAST of GT619192 vs. TAIR peptide
Match: AT4G30150.1 (| Symbols: | CONTAINS InterPro DOMAIN/s: Nucleolar 27S pre-rRNA processing, Urb2/Npa2 (InterPro:IPR018849); Has 58 Blast hits to 49 proteins in 21 species: Archae - 0; Bacteria - 2; Metazoa - 2; Fungi - 0; Plants - 44; Viruses - 3; Other Eukaryotes - 7 (source: NCBI BLink). | chr4:14742452-14749764 FORWARD LENGTH=2009) HSP 1 Score: 68.5514 bits (166), Expect = 4.442e-12 Identity = 69/247 (27.94%), Postives = 110/247 (44.53%), Query Frame = 2 Query: 44 PVDCSAVKML----VAHSCDKLNADISSRENASPLTIKSFTDCHHLLNLLTLMSD--VNTGSFSHIASCIFNLERLLVNALVYFQSTVYRDYYCEYLRLFVSCRKALRYILMGLSEKTDTIRSSPDSVISESSNPVLWLSKSLTVIAGFQEVFSAENILFKSQ--MFSLMDHTSSALLGIGKHQYIHAFCLDKEAEIPCEENSD--------HKISHAENHLLSSTQYVDSSKLEALKCLTLMAQNM 736 P D S V +L +A+ KL ++ + S L + FT C +LLNLL +M N SF AS + +LER +V +++ + + LF +CRK L+ I M +K P +S+SS WL KS A +V ++ K++ +FSLMDHTS L + K+Q+ A E I E + ++ LL++ + + A KC +L+ + Sbjct: 1146 PSDWSEVLILLESSIANLSGKLKSEAFLEAHVSLLDNRKFTACQNLLNLLGVMPKEYTNKKSFQLYASYVLDLERFIVFSMLRCLNKLSCGDMQNLFSLFSTCRKTLKSIAMISCDKVLGATKLP---LSDSSLLASWLFKSAQ--AATCQVRFRNDVTGKARDALFSLMDHTSYMFLTVSKYQFSKALPFSDEKLISSEISEGTGQANLIIENLTEQAETLLNALRATFRDEKTAFKCESLILNKL 1387 The following BLAST results are available for this feature:
BLAST of GT619192 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl) Total hits: 5
BLAST of GT619192 vs. TAIR peptide
Analysis Date: 2011-02-03 (Homology Analysis: Lens culinaris unigene v1 vs TAIR 10 peptide) Total hits: 1
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >GT619192 ID=GT619192; Name=GT619192; organism=Lens culinaris; type=EST; length=767bpback to top |