GT619516

EST Overview
NameGT619516
Unique NameGT619516
TypeEST
OrganismLens culinaris (lentil)
Sequence length693
Libraries
Library NameType
LIBEST_025390 LCUSE1NGcdna_library
Unigenes
This EST is part of the following unigenes:
Unigene NameAnalysis NameSequence type in Unigene
Lens culinaris unigene v1Lens culinaris unigene v1EST
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
Lens culinaris unigene v12010-12-27
Homology Analysis: Lens culinaris unigene v1 vs Trembl2010-12-28
InterProScan analysis for Lens culinaris unigene v12011-01-06
Homology
BLAST of GT619516 vs. TrEMBL
Match: B7FIF5_MEDTR (Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1)

HSP 1 Score: 62.3882 bits (150), Expect = 3.989e-8
Identity = 27/33 (81.82%), Postives = 32/33 (96.97%), Query Frame = 2
Query:   11 DDFIGTGKVQLNKVVTQGFDDSFWPLQTKSGRN 109
            DDFIGTGKVQL+KV++QGFDDS WPLQTK+GR+
Sbjct:   89 DDFIGTGKVQLHKVLSQGFDDSAWPLQTKNGRH 121          
BLAST of GT619516 vs. TrEMBL
Match: A9PEZ2_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_707343 PE=2 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 1.161e-7
Identity = 25/35 (71.43%), Postives = 33/35 (94.29%), Query Frame = 2
Query:    2 LKFDDFIGTGKVQLNKVVTQGFDDSFWPLQTKSGR 106
            L FDDFIG+GK+QL+KV++QGFDD+ WPLQ+K+GR
Sbjct:   82 LTFDDFIGSGKIQLHKVLSQGFDDTTWPLQSKTGR 116          
BLAST of GT619516 vs. TrEMBL
Match: D7UC14_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_180.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00003176001 PE=4 SV=1)

HSP 1 Score: 60.077 bits (144), Expect = 1.980e-7
Identity = 24/36 (66.67%), Postives = 33/36 (91.67%), Query Frame = 2
Query:    2 LKFDDFIGTGKVQLNKVVTQGFDDSFWPLQTKSGRN 109
            L +DDFIG+GK+QL KV++QG+DD+ WPLQTK+GR+
Sbjct:   82 LTYDDFIGSGKIQLQKVLSQGYDDTAWPLQTKTGRH 117          
BLAST of GT619516 vs. TrEMBL
Match: B9HS42_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_649601 PE=4 SV=1)

HSP 1 Score: 59.6918 bits (143), Expect = 2.585e-7
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 2
Query:    2 LKFDDFIGTGKVQLNKVVTQGFDDSFWPLQTKSGR 106
            L  DDFIG GK+QL+KV++QGFDD+ WPLQTK+GR
Sbjct:   82 LSLDDFIGKGKIQLHKVLSQGFDDTTWPLQTKTGR 116          
BLAST of GT619516 vs. TrEMBL
Match: C4TPD9_NICBE (Putative uncharacterized protein NbSS52 OS=Nicotiana benthamiana GN=NbSS52 PE=2 SV=1)

HSP 1 Score: 59.3066 bits (142), Expect = 3.377e-7
Identity = 22/36 (61.11%), Postives = 34/36 (94.44%), Query Frame = 2
Query:    2 LKFDDFIGTGKVQLNKVVTQGFDDSFWPLQTKSGRN 109
            + +DDFIG+GK+QL+KV++QG+DD+ WP+QTK+GR+
Sbjct:   83 ISYDDFIGSGKIQLHKVLSQGYDDTAWPIQTKTGRH 118          
The following BLAST results are available for this feature:
BLAST of GT619516 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Lens culinaris unigene v1 vs Trembl)
Total hits: 5
Match NameE-valueIdentityDescription
B7FIF5_MEDTR3.989e-881.82Putative uncharacterized protein OS=Medicago trunc... [more]
A9PEZ2_POPTR1.161e-771.43Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
D7UC14_VITVI1.980e-766.67Whole genome shotgun sequence of line PN40024, sca... [more]
B9HS42_POPTR2.585e-771.43Predicted protein OS=Populus trichocarpa GN=POPTRD... [more]
C4TPD9_NICBE3.377e-761.11Putative uncharacterized protein NbSS52 OS=Nicotia... [more]
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InterPro
Analysis Name: InterProScan analysis for Lens culinaris unigene v1
Date Performed: 2011-01-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 7..23
score: 3.8e-11coord: 38..50
score: 3.8e-11coord: 55..76
score: 3.8e-11coord: 77..93
score: 3.8
NoneNo IPR availableSEGsegsegcoord: 7..128
score
NoneNo IPR availableSEGsegsegcoord: 18..115
score: NAcoord: 118..129
score
NoneNo IPR availableSEGsegsegcoord: 2..24
score: NAcoord: 27..62
score
NoneNo IPR availableSEGsegsegcoord: 1..32
score
NoneNo IPR availableSEGsegsegcoord: 73..87
score

Properties
Property NameValue
Singlet in analysisLens culinaris unigene v1
Sequences
The following sequences are available for this feature:

EST sequence

>GT619516 ID=GT619516; Name=GT619516; organism=Lens culinaris; type=EST; length=693bp
CCTCAAATTCGATGATTTTATCGGCACCGGAAAGGTTCAATTGAACAAGG
TTGTGACTCAAGGTTTTGATGACTCTTTTTGGCCACTTCAAACTAAATCT
GGCAGAAACTAGGTTCCTCCTCAACCCATAGTACTCCTACTTCCTATGCG
CCAACACCCACACCTCCTTCCTACTTTCCACAACAACAACATCAACAACA
ACAACATCAACAACAACCATCTTACTCTAATTATCCTCCTCCTCCTGCTC
TCGCTTATCCTCATATTCCTCCTGCTTCACATCATTCATCTCCCTATCCA
TCCATGCCATCTCCCTATCCACCACCCTCATCCTCCCCATACCCTCCTCC
CCACTCAGCTTATCCACCACCCTCATCATCACCTTACCCTCCTCCCCACT
CAGCTTATCCACCACCTTCTGCATACCCCCCACCTGCAACTTATCCTCCA
AATCCTGGAATGTACCCTCCACCACCATACTGATGCAGATCTGCTACTTC
CAAGCACTAGTTTTCTGCATTTCTCTATGTTTTCATTTTGTAGGCATGAC
TATATCTATCTGTCATTGAAGTCGACTAATGGAATGATAATTTTGTATAA
AATTTATTGCCTATCAAAGTTTTTATATTATATGCTCTAAATTACCCTAA
GCAATTGGTTTTACACAAAGAATGACAAACTTAGATATTTAAT
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