FG532260

EST Overview


Name	FG532260
Unique Name	FG532260
Type	EST
Organism	Pisum sativum (pea)
Sequence length	446

Libraries


Library Name	Type
LIBEST_023217 MeriP Pisum sativum Shoot apical meristem ESTs	cdna_library

Unigenes

This EST is part of the following unigenes:


Unigene Name	Analysis Name	Sequence type in Unigene
Pisum sativum unigene v2	Pisum sativum unigene v2	EST
Pisum sativum unigene v1	Pisum sativum unigene v1	EST

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
Pisum sativum unigene v1	2010-12-27
Homology Analysis: Pisum sativum unigene v1 vs Trembl	2010-12-28
Pisum sativum unigene v2	2011-03-01
Homology Analysis: Pisum sativum unigene v2 vs Trembl	2011-04-27
Homology Analysis: Pisum sativum unigene v2 vs Lotus proteins	2011-04-21
Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins	2011-04-21
InterProScan analysis for Pisum sativum unigene v2	2011-04-27
InterProScan analysis for Pisum sativum unigene v1	2010-12-29

Homology

[Close]

BLAST of FG532260 vs. TrEMBL
Match: B9H398_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_555959 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.561e-9
Identity = 38/59 (64.41%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    1 MQVLGVMARILCQFFGSGNDXXXXXXXXTLPPQV---LHHGGGLG-SVKPDASSPSEFM 165
            MQ+LGVMAR +CQFFGS ND         LPPQV   L H GGLG S KPDA+SPSEFM
Sbjct:  341 MQILGVMARFICQFFGSANDGLGGGLGG-LPPQVLQNLQHPGGLGDSGKPDANSPSEFM 398

[Close]

BLAST of FG532260 vs. TrEMBL
Match: D7TSS7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_6.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00030867001 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.021e-8
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    1 MQVLGVMARILCQFFGSGNDXXXXXXXXTLPPQV---LHHGGGLG-SVKPDASSPSEFM 165
            MQ+LGVMAR++CQFFGS ND         LPPQV   L H  GLG + KPDA+SPS+FM
Sbjct:  265 MQILGVMARLVCQFFGSAND-GLGGGLGALPPQVLQNLQHPVGLGDNGKPDANSPSQFM 322

[Close]

BLAST of FG532260 vs. TrEMBL
Match: A5AZL6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026134 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 5.021e-8
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    1 MQVLGVMARILCQFFGSGNDXXXXXXXXTLPPQV---LHHGGGLG-SVKPDASSPSEFM 165
            MQ+LGVMAR++CQFFGS ND         LPPQV   L H  GLG + KPDA+SPS+FM
Sbjct:  332 MQILGVMARLVCQFFGSAND-GLGGGLGALPPQVLQNLQHPVGLGDNGKPDANSPSQFM 389

[Close]

BLAST of FG532260 vs. TrEMBL
Match: B9H398_POPTR (Predicted protein OS=Populus trichocarpa GN=POPTRDRAFT_555959 PE=4 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 1.952e-9
Identity = 38/59 (64.41%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    1 MQVLGVMARILCQFFGSGNDXXXXXXXXTLPPQV---LHHGGGLG-SVKPDASSPSEFM 165
            MQ+LGVMAR +CQFFGS ND         LPPQV   L H GGLG S KPDA+SPSEFM
Sbjct:  341 MQILGVMARFICQFFGSANDGLGGGLGG-LPPQVLQNLQHPGGLGDSGKPDANSPSEFM 398

[Close]

BLAST of FG532260 vs. TrEMBL
Match: D7TSS7_VITVI (Whole genome shotgun sequence of line PN40024, scaffold_6.assembly12x (Fragment) OS=Vitis vinifera GN=VIT_00030867001 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.279e-8
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    1 MQVLGVMARILCQFFGSGNDXXXXXXXXTLPPQV---LHHGGGLG-SVKPDASSPSEFM 165
            MQ+LGVMAR++CQFFGS ND         LPPQV   L H  GLG + KPDA+SPS+FM
Sbjct:  265 MQILGVMARLVCQFFGSAND-GLGGGLGALPPQVLQNLQHPVGLGDNGKPDANSPSQFM 322

[Close]

BLAST of FG532260 vs. TrEMBL
Match: A5AZL6_VITVI (Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_026134 PE=4 SV=1)

HSP 1 Score: 60.8474 bits (146), Expect = 6.279e-8
Identity = 35/59 (59.32%), Postives = 41/59 (69.49%), Query Frame = 1

Query:    1 MQVLGVMARILCQFFGSGNDXXXXXXXXTLPPQV---LHHGGGLG-SVKPDASSPSEFM 165
            MQ+LGVMAR++CQFFGS ND         LPPQV   L H  GLG + KPDA+SPS+FM
Sbjct:  332 MQILGVMARLVCQFFGSAND-GLGGGLGALPPQVLQNLQHPVGLGDNGKPDANSPSQFM 389

[Close]

BLAST of FG532260 vs. Lotus protein
Match: chr2.CM0405.90.r2.d (- phase: 0 /pseudo)

HSP 1 Score: 71.2478 bits (173), Expect = 1.566e-13
Identity = 39/63 (61.90%), Postives = 45/63 (71.43%), Query Frame = 1

Query:    1 MQVLGVMARILCQFFGSGNDXXXXXXXXTLPPQVLHHGGGLGSVKPDASSPSEFM*KFVPFHL 189
            MQVLGV+ARILCQFFGS +D         LPPQ LHH  GL +VKPDA+SPSEF+*   PF +
Sbjct:  278 MQVLGVIARILCQFFGSRSDGLGAGLG-ALPPQDLHHADGLENVKPDANSPSEFI*N--PFRI 337

[Close]

BLAST of FG532260 vs. Medicago proteins
Match: IMGA|Medtr5g079680.1 (M404 (AHRD V1 *-*- Q7XA58_LILLO) chr05_pseudomolecule_IMGAG_V3.5 33066024-33064250 E EGN_Mt100125 20100825)

HSP 1 Score: 93.2041 bits (230), Expect = 5.517e-20
Identity = 45/55 (81.82%), Postives = 46/55 (83.64%), Query Frame = 1

Query:    1 MQVLGVMARILCQFFGSGNDXXXXXXXXTLPPQVLHHGGGLGSVKPDASSPSEFM 165
            MQVLGVMARILCQFFGSGND        TLP QVLHHGGGLG+VKPDASSPSEFM
Sbjct:  274 MQVLGVMARILCQFFGSGNDGLGGAGLGTLPTQVLHHGGGLGNVKPDASSPSEFM 328

The following BLAST results are available for this feature:

BLAST of FG532260 vs. TrEMBL
BLAST of FG532260 vs. TrEMBL
BLAST of FG532260 vs. Lotus protein
BLAST of FG532260 vs. Medicago proteins

BLAST of FG532260 vs. TrEMBL
Analysis Date: 2010-12-28 (Homology Analysis: Pisum sativum unigene v1 vs Trembl)
Total hits: 3


Match Name	E-value	Identity	Description
B9H398_POPTR	1.561e-9	64.41	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7TSS7_VITVI	5.021e-8	59.32	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5AZL6_VITVI	5.021e-8	59.32	Putative uncharacterized protein OS=Vitis vinifera...	[more]

BLAST of FG532260 vs. TrEMBL
Analysis Date: 2011-04-27 (Homology Analysis: Pisum sativum unigene v2 vs Trembl)
Total hits: 3


Match Name	E-value	Identity	Description
B9H398_POPTR	1.952e-9	64.41	Predicted protein OS=Populus trichocarpa GN=POPTRD...	[more]
D7TSS7_VITVI	6.279e-8	59.32	Whole genome shotgun sequence of line PN40024, sca...	[more]
A5AZL6_VITVI	6.279e-8	59.32	Putative uncharacterized protein OS=Vitis vinifera...	[more]

BLAST of FG532260 vs. Lotus protein
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Lotus proteins)
Total hits: 1


Match Name	E-value	Identity	Description
chr2.CM0405.90.r2.d	1.566e-13	61.90	- phase: 0 /pseudo	[more]

BLAST of FG532260 vs. Medicago proteins
Analysis Date: 2011-04-21 (Homology Analysis: Pisum sativum unigene v2 vs Medicago proteins)
Total hits: 1


Match Name	E-value	Identity	Description
IMGA\|Medtr5g079680.1	5.517e-20	81.82	M404 (AHRD V1 -- Q7XA58_LILLO) chr05_pseudomolec...	[more]

InterPro

Analysis Name: InterProScan analysis for Pisum sativum unigene v2
Date Performed: 2011-04-27


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 21..28 score

Analysis Name: InterProScan analysis for Pisum sativum unigene v1
Date Performed: 2010-12-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	SEG	seg	seg	coord: 21..28 score

Properties


Property Name	Value
Singlet in analysis	Pisum sativum unigene v2
Singlet in analysis	Pisum sativum unigene v1

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>FG532260 ID=FG532260; Name=FG532260; organism=Pisum sativum; type=EST; length=446bp
ATGCAAGTTCTTGGAGTTATGGCGAGAATACTTTGTCAGTTCTTTGGTTC
AGGAAATGATGGATTGGCTGGTGCTGGATTAGGGACATTGCCTCCGCAGG
TGTTGCATCATGGTGGTGGTTTAGGGAGTGTGAAACCCGATGCCAGTTCG
CCTTCCGAGTTTATGTAGAAGTTTGTTCCTTTTCATTTGAATTCCATTTT
GTGAGTACACACGTTTAACCTTCTCCATTTGATTCTTCATTGAAAGGCTG
TTTTCCTGGATCGAGAAATGTCATTTCTGTTTTTTGTTTTGCATCAGTTA
GATGATTCTGAAATGCAGTAGTTGTATCATATTTTGTGAACTTTTGAAGG
AAATGTCCGATTTCGACGAAGACCGACAAGGTGAGACGTGACTCCTGGAT
AGCCCCAACACGGATCAGCCGAGCATGTATACTGTATAACAATTTT

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