CaC11103, CaC11103 (genetic_marker) Cicer sp.

Marker Overview


Name	CaC11103
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(at)5
Primer 1	CaC11103.Forward Primer: AACTGGTTCGCCAAGTGTGT
Primer 2	CaC11103.Reverse Primer: TTTGAATAGATACAACCCAACCC
Max Length	285
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca1	chromosome	Ca1:14253440..14253687 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr1	chromosome	chr1:14253440..14253687 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Deokar AA, Ramsay L, Sharpe AG, Diapari M, Sindhu A, Bett K, Warkentin TD, Tar An B. Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly. BMC genomics. 2014 Aug 23; 15(1):708.

Sequence

>CaC11103 ID=CaC11103; Name=CaC11103; organism=Cicer sp.; type=genetic_marker; length=635bp
TTCGACTCTTGGGTTTGACTCCTTGAAAGAAATGGAGCTAATTAATTCAA
CGGTTTACGAAACCCTTCGAATGAACCCACCGGTTCCGCTTCAATTTCGG
TCGAGCTAGAAAGGATTTTCGGCTCAATTCGTATGACTCGTCGTTCAATG
TGAAGAAGGGTGAGTTATTATGTGGATATCAAAAGCTTGTAATGAGGGAT
TCAGTTGTGTTTGATGAACCAGACCGGTTTAAACCGGAACGGTTCACTGA
AGAGAAAGGGGCCGAGTTATTGAACTATTTGTATTGGTCTAATGGACCAC
AAACTGGTTCGCCAAgtgtgtCTAATAAGCAATGTGCGGCCAAGGACATT
GTAACCTTCACCGCATCATTGATTGTGGCACATTTGTTTCGTAGGTACGA
TTTCATTAAAGGGGATGGTAGTTCCTTCACTATCTTACGCAAGGCCACAT
GAAGAGTAAGGGTTGGTGGTTATTGGTGATTATTAAAGACatatatatat
GTATGttttttCTTTATGTATATGAGGGGTTGGGTTGTATCTATTCaaaa
aaaTAATAATGgagagaCTAATTTGTATTGAGAtttttATATCACTTCAC
ttttttCNCCAATACTACTCCACATgagagagaTG

Search form

CaC11103, CaC11103 (genetic_marker) Cicer sp.