CaC13356, CaC13356 (genetic_marker) Cicer sp.

Marker Overview


Name	CaC13356
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(ca)6
Primer 1	CaC13356.Forward Primer: TTCATTTCAGCCATCTTCACTG
Primer 2	CaC13356.Reverse Primer: TGTTGGAGACTTGAATGCGA
Max Length	278
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca6	chromosome	Ca6:50716134..50716263 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr6	chromosome	chr6:50716134..50716263 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Deokar AA, Ramsay L, Sharpe AG, Diapari M, Sindhu A, Bett K, Warkentin TD, Tar An B. Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly. BMC genomics. 2014 Aug 23; 15(1):708.

Sequence

>CaC13356 ID=CaC13356; Name=CaC13356; organism=Cicer sp.; type=genetic_marker; length=690bp
GCAGTCTCAGtttttttttttGGGGAACATTTCATTGATTAGGGTTTTCA
TTTCAGCCATCTTCACTGTCTTATCTCACAGTTcacacacacacaTCAAT
GGAAGCAATCACCGAAGGAGTAAACAACATCAACATCTCCGATTCCATTA
AGAAGAATCGCATTCAAGTCTCCAACACCaaaaaaCCACtcttcttctAC
GTTAATCTCGCTAAGAGGTATATGCAACAGCATAATGAAGTTGAGTTATC
TGCACTAGGAATGGCTATTGCCACAGTGGTTACTGTTGCTGAAATTTTaa
aaaaCAATGGGCTTGCTGTCGAAAAGAAAATCATGACATCAACTGTTGAC
ATAAAAGATGATTCTAGAGGAAGACCTGTTCAAAAGGCCAAGATCGAAAT
ATTACTCGGGAAGACTGCAAACTTCGATGAGTTGATGGCCGCTGCAGCGG
CTGCTGCCGAAGATGGTGAAAATGGAGATGTTGAAGAGCATGCAGCATAA
GTTCATCAGTATAACACCTGTTTTGGGTGAATCTATGTTCTGTTGAATGA
ATTGTTTGATTGTTGTTAGTAGATAGCAGACAAGCATAGAATTTGTTATA
GACTGACATGCAATGTTGAGCTACCTAATTCCTTAATTTCTTTTCCTTAT
TATAAATAGAGGCTTTTaaaaaaaaaaaCTGAGACTGCCA

Search form

CaC13356, CaC13356 (genetic_marker) Cicer sp.