CaC14614, CaC14614 (genetic_marker) Cicer sp.

Marker Overview


Name	CaC14614
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(ct)5
Primer 1	CaC14614.Forward Primer: ATCCGTAATGGATTGGGCTT
Primer 2	CaC14614.Reverse Primer: TATATGGCAACCAACCAGGG
Max Length	294
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca5	chromosome	Ca5:47388533..47388717 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr5	chromosome	chr5:47388533..47388717 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Deokar AA, Ramsay L, Sharpe AG, Diapari M, Sindhu A, Bett K, Warkentin TD, Tar An B. Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly. BMC genomics. 2014 Aug 23; 15(1):708.

Sequence

>CaC14614 ID=CaC14614; Name=CaC14614; organism=Cicer sp.; type=genetic_marker; length=474bp
GATCGTTGATGGTTTGCAATTTCCAGCAATGGTGAGTTGAAAGCCAGATC
AATTGGCTCACATTGTTTGCTTGATTAAGCAGttttttGAGTTGTGTTCA
AGCAGATTCTTATGCTACCTGGGaaaaaaTGGTCATCCGTAATGGATTGG
GCTTGTGAAGGCTGACTTTATATGACATGAGATCTTCCTTCCTGCCTCTG
ATGATATTGACAGATATTCTGATCGGTTTCAGGTTTGTGATTGGAATGTG
TAGGACACCATTTGAATTTGATTGATATTGTGTCATGctctctctctCGC
CCTGGTTGGTTGCCATATAATGCGAAGTTGCACCTTAGTTTTAGAGGTGT
AACCAATTATTCTTGTGTTTTACTTAACTAGATTGTTTTGTTAAACTATT
ATTTGTTACTGTTGTATAGATAGttttttCACTGGgagagaACCCAAATA
TGAAAATACAGgagagaCAATTTT

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CaC14614, CaC14614 (genetic_marker) Cicer sp.