CaC14706, CaC14706 (genetic_marker) Cicer sp.

Marker Overview


Name	CaC14706
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(tat)5
Primer 1	CaC14706.Forward Primer: TCCTCTTGGAGTAGCCATTCA
Primer 2	CaC14706.Reverse Primer: GGATTGCACAACACCACAAC
Max Length	297
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca5	chromosome	Ca5:25596064..25596279 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr5	chromosome	chr5:25596064..25596279 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Deokar AA, Ramsay L, Sharpe AG, Diapari M, Sindhu A, Bett K, Warkentin TD, Tar An B. Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly. BMC genomics. 2014 Aug 23; 15(1):708.

Sequence

>CaC14706 ID=CaC14706; Name=CaC14706; organism=Cicer sp.; type=genetic_marker; length=386bp
CGCTTATGAAGAACAAGTCAACTCAGTCATCAAAACTGTAGAACCAGAGA
AGATTATACCAAAGATTGCAAATTTCTCCTCTTGGAGTAGCCATTCAGAG
CTAGTATCAGTAATGGCAAGGACTACTTGCCCTaaaaaCCAAGAtattat
tattattatCATTATAATACTAGTCaataataatAACATAAAGGAGaaaa
aaTTTGCCTTCTGTGTATTTTATCCAAGGCAAATGTTCTATTATAAGGTT
ATCTACTTAGATGTATTTAAGTGTTGTGGTGTTGTGCAATCCACATCTTA
CCTTTACTTTGAATGATGTGATGATTTGAATTTCACTATCATATTGTATT
TTGGtttttAAGAAATGATGTGTATTTATGTTAAAA

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CaC14706, CaC14706 (genetic_marker) Cicer sp.