CaC15052, CaC15052 (genetic_marker) Cicer sp.

Marker Overview


Name	CaC15052
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(ctt)9
Primer 1	CaC15052.Forward Primer: ATCACAACGTGGTGGTAGCC
Primer 2	CaC15052.Reverse Primer: TGATGAAATCAAAGTACTAGCAGCA
Product Length	145
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca7	chromosome	Ca7:8615603..8615747 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr7	chromosome	chr7:8615603..8615747 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Deokar AA, Ramsay L, Sharpe AG, Diapari M, Sindhu A, Bett K, Warkentin TD, Tar An B. Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly. BMC genomics. 2014 Aug 23; 15(1):708.

Sequence

>CaC15052 ID=CaC15052; Name=CaC15052; organism=Cicer sp.; type=genetic_marker; length=695bp
CGGCGCACCGTCTTCTTCAACAACATTAGATTTATCAGAAACAAGTGGAG
AAGAAAACATGGGAAGaaaaaGAAGACCTAGCGAACAAGATTTAACATCA
TCAACAACATCacaacaacaAATGGGGAGTTATCTTCTACAGTCAAGTGC
AGGTTCAATTCCGGCAAGTCATACTCAGATTCCAGCGAatatatGGATGG
TAGCAAATTCAAATAACCGACCAAGTAATGAGTGGTGATCCAATTTGGAC
ATTTCCATCTGTGAATAACAGTGCTGCCGCAGgctgctgctTTGTATAGA
GGAGCGGTTTCAACAAGTGGATTACATTTTATGAATTTTCCACCACCTAT
GGCTTTATTGCCTGGTCAGCAATTAAGTAATTCATTCTCTTGGTGGTAAT
AGTAGTGGTGGAGGAgggggTGGGAATATCAATATGAATATGAGtatgaa
tatgaatatgaaTGAAGGACATTTGAGTATGCTTGCTGGTCTTAGTCCTT
ATCGTCCAGTTTCTCATCATGAATCTCATCAACAAGGAAGTGGATCACAA
TCACAACGTGGTGGTAGCCATGATCGACATGATAACACAAGTCACCACTC
CTAGTACAACATTTATttattattaCCTCcttcttcttcttcttcttctt
cttcttACATTACATGTTTTGCTGCTAGTACTTTGATTTCATCAT

Search form

CaC15052, CaC15052 (genetic_marker) Cicer sp.