CaC20121, CaC20121 (genetic_marker) Cicer sp.

Marker Overview


Name	CaC20121
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(tc)5
Primer 1	CaC20121.Forward Primer: GCTTGTTGAACTGGATGCAA
Primer 2	CaC20121.Reverse Primer: GAGGAGTGTTCTGTGAAGTGTGAA
Max Length	260
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca8	chromosome	Ca8:15385600..15385716 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr8	chromosome	chr8:15385600..15385716 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Deokar AA, Ramsay L, Sharpe AG, Diapari M, Sindhu A, Bett K, Warkentin TD, Tar An B. Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly. BMC genomics. 2014 Aug 23; 15(1):708.

Sequence

>CaC20121 ID=CaC20121; Name=CaC20121; organism=Cicer sp.; type=genetic_marker; length=211bp
TGGAGTTTGCAAGTGGCACACCAGCAACACCTAACCAAAGTGCTTGTTGA
ACTGGATGCAAAGATGGTTATTTGATTATTTTAATGGCAAGTTGCCTCAA
GCTTCTATTAATCATTTTATTGTTGATTGTAAGTAGAGGAGTGTTCTGTG
AAGTGTGAACTAatatatatatAGTTCACACTTCACAGAACACTCCTCTA
CTTACAATCAA

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CaC20121, CaC20121 (genetic_marker) Cicer sp.