CaC3817, CaC3817 (genetic_marker) Cicer sp.

Marker Overview


Name	CaC3817
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(ttg)7
Primer 1	CaC3817.Forward Primer: TTGTGAGCAAGGGAATGACA
Primer 2	CaC3817.Reverse Primer: TCAATCCCACCAAGTGGAAC
Max Length	276
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca5	chromosome	Ca5:11934381..11934607 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr5	chromosome	chr5:11934381..11934607 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Deokar AA, Ramsay L, Sharpe AG, Diapari M, Sindhu A, Bett K, Warkentin TD, Tar An B. Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly. BMC genomics. 2014 Aug 23; 15(1):708.

Sequence

>CaC3817 ID=CaC3817; Name=CaC3817; organism=Cicer sp.; type=genetic_marker; length=807bp
CGCTATTGACGACGGGTTTACGACCCTCCAGTGGCTTCAGTCAGTGGCCA
GGGGAGACGTAAGTGACCCGTGGCTTGAAGAACACGGCGACTTCAGTCGA
GTTTTCCTCATAGGAGATAGCTCCGGAGGAAACTTAGTCCATGAAGTCGC
TGCTAGAGTGGGGTCCATCGACTTGAGTCCAATTTGGCTCGCCGGAGCAA
TTCCCATTCATCCTGGATTTGTCCGGTCATACCGGAGCAAATCCGAACTC
GAAATGCCACAATCACCAtttttAACATTGGACATGATGGACAAGTTCTT
GAGGATGGCACTACCAATTGGAAGCAACAAAGACCACCCCATCACTTGCC
CAATGGGCGAGGCGGCGCCGCCTCTTGACGGCCTGAAACTGCCGCCATTT
CTTCTTTGCGTGGCTGaaaaaGATTTGCTTAACGATACACAAATGGAGTT
TTATGAAGCCATGaaaaaaGCCAATAAAGATGTGGACCtttttGTGAGCA
AGGGAATGACACATAGTTTCTATCTCAACAAAATGGCTGTGGATTTGGAC
CACAATGTTAATGCTGAAATGAATGCATTAATTGGTAGGGTCAAAGAATT
CATTGAAAACCACTAAATTTTAATATCTTGTTTTGATTTGTAGTAGTGTG
CATTAATTGATCAAGAGTGTCTAtttttGTTGCtatatatatatataTGT
TCCACTTGGTGGGATTGAGTGAGTAGTTAtttttAACTATAAATGTGCTG
CAACctctctTATTTtaataataaATACATAATGTCAATTTCGATTATTT
ATTAAGT

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CaC3817, CaC3817 (genetic_marker) Cicer sp.