CaC5928, CaC5928 (genetic_marker) Cicer sp.

Marker Overview


Name	CaC5928
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(tgt)7
Primer 1	CaC5928.Forward Primer: GCCATGTTTGGGATGTTTGT
Primer 2	CaC5928.Reverse Primer: TAGCGACCACATGCATAGGA
Max Length	283
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca6	chromosome	Ca6:31257055..31257344 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr6	chromosome	chr6:31257055..31257344 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Deokar AA, Ramsay L, Sharpe AG, Diapari M, Sindhu A, Bett K, Warkentin TD, Tar An B. Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly. BMC genomics. 2014 Aug 23; 15(1):708.

Sequence

>CaC5928 ID=CaC5928; Name=CaC5928; organism=Cicer sp.; type=genetic_marker; length=830bp
ACCAATAAACAAGAAGCTGACTGCAAAGATAATCCAGGACAACAGAGCAA
GACTCAAGAAACTAAACAAGCTCCAATATCAAtctctcAAGAGGGGAact
actacttctctcTGTGGGTATTGGATTGGCTTGTAGTGGATATTGCTTGA
TAACTTTAGTCAGTACAGGCTGCTTTAAGTTATGCGATTGGAGTCCTTTT
CAGTTGCGTGTACCTTCAGCTCTTGTATCAACATGCAGACAGCATATCCA
GTGAAACCGTTCCTACAAATATTCATGaaaaaGAAGTCaaaaaaaaTTGG
TATAAGAAGTGAAGACCTTGAAGAttttttGGAGAAAACAATCAAGGGTA
GCGGTATATCACTTTCATCTCCAAGGCTTGTGATCCCGGCGGCAATTTAT
GGACTTTGGGCTGTGTCTCATCAGTATATTACTAGTGATTTGTTTGATTT
TCAGCTTGTGCCAGCCATGTTTGGGATGTTTGTGTACAAGgctgctgctT
TAGTGCAAGTTTATAGAGACAATAAAGGGTTAGGCTTTGTATTTCCAGAA
GATGAATGAAGGCTCTAAGTGACTCAACTATTTATTTTGCTATGCTCAGA
AGAATGCGCCATACCCTACATCCTCAAATATTGGAAATAGCTAGTTGCAT
TATCTTGTACCGAAATAAATGTCatatatatatTGAAAGAATGGAATATA
ATTTGAAATAGATaaaaaaTAGGCTGTTGAAGTTTTCCTATGCATGTGGT
CGCTAACTATAATTTAGTTCAAAGATGTAAATGTAAGTTTGCAGTTGTTT
TGCTTGGGTATTGTTGtatataCATTTATT

Search form

CaC5928, CaC5928 (genetic_marker) Cicer sp.