CaC6224, CaC6224 (genetic_marker) Cicer sp.

Marker Overview


Name	CaC6224
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(gaa)5
Primer 1	CaC6224.Forward Primer: TTGTGAATATGAGATGGCCAAA
Primer 2	CaC6224.Reverse Primer: TCAACACTTCCCAAAGCTGA
Max Length	281
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca4	chromosome	Ca4:35292061..35292203 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr4	chromosome	chr4:35292061..35292203 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Deokar AA, Ramsay L, Sharpe AG, Diapari M, Sindhu A, Bett K, Warkentin TD, Tar An B. Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly. BMC genomics. 2014 Aug 23; 15(1):708.

Sequence

>CaC6224 ID=CaC6224; Name=CaC6224; organism=Cicer sp.; type=genetic_marker; length=856bp
TTACTAAAATTACTGTTATACCCTTATTAATTTTACAGATATTATGATGT
GATTTGATTGACGGTaaaaaaaTGATTTGAtttttttttGATTGGATGCA
TGTGTAAACAGATTACACTGTCTGTGCATAGAACTTAATCTATTTTAAAT
AACATGTGttttttttATCCTCAAAAGGACCAAAAGAAGATGCAAGATCT
ACTCCTAAATCAAAAGGAAGCtatataTGGGTCTAAACCTAGTCCAAGaa
aaaCTAACAGCTTCCGAAAGACAAATGGGTATCGTGCAaatggcaatggc
aatggcAATGTATCAATGCCGCCTACACCGCGCCGGAACTCAGTGAGCGG
TGGAACATCTGAACTACATACACCTCGTTCCTACTCCAGTCGTCATAACG
GATTACTTCAACGAAAATAGAAGGTTGTCTTACTGCACCTCTGAACTTTG
TGGCTATACCTAAGGAAGATACAATGTCATATAGTTGCGGTTCGGAACCC
GAGTCCCCTCCTCAAGCTTAAGCTCAATaaaaaCAAAATGGAATTGACCA
AGATTTTCTTGTAAACATTATTAATATCAAGAGCAAACCTTGTGAATATG
AGATGGCCAAATTGTAAACTAGTGTATGTTGCTTGTAATAAGCTGAGata
tatatatACATGGACAGTGAGTAATGACTGACATTTGAGGACAGGAAATT
AGTTGAAGAACATCAGCTTTGGGAAGTGTTGATACAAAGTAGGGACAGTT
AAGGAGACAGTGAAGATCATAGAGGAGTGTTTGACTATATGTATTTGTTG
GTTTGTTTGTGTTTCAGGTGtatatatataATGtttttAGTGTGATGGTC
ATCATT

Search form

CaC6224, CaC6224 (genetic_marker) Cicer sp.