CaC6537, CaC6537 (genetic_marker) Cicer sp.

Marker Overview


Name	CaC6537
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(tc)5
Primer 1	CaC6537.Forward Primer: TGCAAATGGAGCACTCAGAA
Primer 2	CaC6537.Reverse Primer: CCATTGAGTTACCACCTCCG
Max Length	298
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca6	chromosome	Ca6:9121514..9121789 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr6	chromosome	chr6:9121514..9121789 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Deokar AA, Ramsay L, Sharpe AG, Diapari M, Sindhu A, Bett K, Warkentin TD, Tar An B. Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly. BMC genomics. 2014 Aug 23; 15(1):708.

Sequence

>CaC6537 ID=CaC6537; Name=CaC6537; organism=Cicer sp.; type=genetic_marker; length=656bp
GCCTcaacaacaaCCATCTGGTAGTCATAGACGCACAAACAGCAGAGACC
TTGAGTCTCAGTTTGCTAACCTTTCTCTGAAGCACAAGGATGCCAATTCA
GGGCATGACCCTGCAAATGGAGCACTCAGAATTTAGCTCTGCCAATTGGT
GTTGCCACACCTGTGATAGAATTTGTTTTCCTTCCGACATGCGGGATTGT
GTAGAGATTTCCAGGATATGCCctctctctctGCCCGCTTTGCTGATATT
TCAACGTTCATTATTAAGTCATTATGTTATCTATTTTACTTCAACTATCA
CCATTTATTTAATGTGCACCTGGTGGTCATTGCCGAAATCTTGATTCTGT
TTCTGCCACTTGACCTGCCGGAGGTGGTAACTCAATGGTTTCGAAGCTTT
CGCTCAACACTGAATCTTCTTCAGTGATGTAACTGAATACCTCCTCTTGT
GAATCTTCATTGTTGTGGAATTTGGCCCAGTGCAAATAGCAGATAATCTC
AGGGCTATGTGCattattattTGTATGGATAAAGTTTAGCTAATGTTTGT
AATATGATTTTAATGAAGTTCCTCtttttCTAAACAATGTTGTCTGATTG
CAATGAGAAGATTGACTTGGGATTTTCTTTGTTTGTTATTATTTCATAAA
ATTAAA

Search form

CaC6537, CaC6537 (genetic_marker) Cicer sp.