CaC9743, CaC9743 (genetic_marker) Cicer sp.

Marker Overview


Name	CaC9743
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(tatc)6
Primer 1	CaC9743.Forward Primer: GGGAGTGGAGCAATAGTGGTT
Primer 2	CaC9743.Reverse Primer: ATGAACCACCTTCCTGAGCC
Max Length	262
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca7	chromosome	Ca7:5665443..5665613 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr7	chromosome	chr7:5665443..5665613 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2014	Deokar AA, Ramsay L, Sharpe AG, Diapari M, Sindhu A, Bett K, Warkentin TD, Tar An B. Genome wide SNP identification in chickpea for use in development of a high density genetic map and improvement of chickpea reference genome assembly. BMC genomics. 2014 Aug 23; 15(1):708.

Sequence

>CaC9743 ID=CaC9743; Name=CaC9743; organism=Cicer sp.; type=genetic_marker; length=680bp
GATTGAAGCATCGGGTTACGAATTCGTGTGGGTAGTTCCTTGAGAAGAAA
GGGAAAGAGTACGAAAGCGAAGAAGAGAAAGAAAAGTGGTTTGCCGAAGG
GATTCGAagagagAAACAGTGAGAAAGGTTTGATAGTTAGGGGATGGGCC
CCACAGGTATTGATTTTGAGCCATCCTGCTGTGGGTGCGTTTATGACGCA
TTGTAGGGTGGAATTCTATTGTGGAGGCGGTTAGTGCGGGGATTCCGATG
ATTACGTGGCCGGTGCATGGTGAACAATTTTACAATGAGAAGTTGATAAC
GCAGGTTGCgggggATTGGGGTGGAGGTGGGTGCAGGGGAGTGGAGCAAT
AGTGGTTATGGGgagagagagaAGTTGGTCAGTGGGGAGAGTATAGAGAA
GGCTCTGAGGAGATTAATGGACGGTGGTGATGATGCGCAGGAAATCAGAC
GGCGTGCGCGAGAGTTTGGTGATAAGGCAAAAGAGGCGGCTCAGGAAGGT
GGTTCATCTTACaaaaaTTTAACGGTCTTGATTGATGATCTAAAACGATT
GAGGGATTGCAACTTGCAAGCTTCAAAATGCTAATACGGTAATACCCATT
TGGACTGCTGTAATATTTATTTTGAGATGTTTGGATATTTTGATAGAATC
AATTTTCATTTTATAAAATTGATTCTAATT

Search form

CaC9743, CaC9743 (genetic_marker) Cicer sp.