CaGMS1, CaGMS1 (genetic_marker) Cicer sp. | PulseDB

Marker Overview

Marker Overview


Name	CaGMS1
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(ATAA)35
Primer 1	CaGMS1.Forward primer: AAAGCTAAGGACCCCACGTT
Primer 2	CaGMS1.Reverse primer: TATGCTCCAAGGGATGCAAG
Product Length	280
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca3	chromosome	Ca3:128378..128589 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr3	chromosome	chr3:128378..128589 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2015	Khajuria YP, Saxena MS, Gaur R, Chattopadhyay D, Jain M, Parida SK, Bhatia S. Development and Integration of Genome-Wide Polymorphic Microsatellite Markers onto a Reference Linkage Map for Constructing a High-Density Genetic Map of Chickpea. PloS one. 2015; 10(5):e0125583.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	chickpea-ICC4958xPI489777-RIL-2015	LG8	N/A	79.5	CaGMS1	View
2	chickpea-ICC4958xPI489777-RIL-2015-2	LG8	N/A	72.51	CaGMS1	View
3	Chickpea-ICC4958/PI489777-RIL-2020	LG08	N/A	100.62	CaGMS1	View