CaGMS1164, CaGMS1164 (genetic_marker) Cicer sp. | PulseDB

Marker Overview

Marker Overview


Name	CaGMS1164
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(AG)9(GT)6
Primer 1	CaGMS1164.Forward primer: TAGGTTTGTTGTGTGGGTCG
Primer 2	CaGMS1164.Reverse primer: CCCTCACTCAGCGGTCTATC
Product Length	142
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca3	chromosome	Ca3:39804792..39804933 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr3	chromosome	chr3:39804792..39804933 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2015	Khajuria YP, Saxena MS, Gaur R, Chattopadhyay D, Jain M, Parida SK, Bhatia S. Development and Integration of Genome-Wide Polymorphic Microsatellite Markers onto a Reference Linkage Map for Constructing a High-Density Genetic Map of Chickpea. PloS one. 2015; 10(5):e0125583.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	chickpea-ICC4958xPI489777-RIL-2015	LG3	N/A	32.96	CaGMS1164	View
2	chickpea-ICC4958xPI489777-RIL-2015-2	LG3	N/A	23.65	CaGMS1164	View
3	Chickpea-ICC4958/PI489777-RIL-2020	LG03	N/A	64.92	CaGMS1164	View