CaGMS1171, CaGMS1171 (genetic_marker) Cicer sp. | PulseDB

Marker Overview

Marker Overview


Name	CaGMS1171
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(GT)9(AT)6
Primer 1	CaGMS1171.Forward primer: AAGACATTATGAAATGCAACCAAA
Primer 2	CaGMS1171.Reverse primer: TGAGAGATGCATTCAACATTATAGG
Product Length	250
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca5	chromosome	Ca5:12592203..12592451 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr5	chromosome	chr5:12592203..12592451 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2015	Khajuria YP, Saxena MS, Gaur R, Chattopadhyay D, Jain M, Parida SK, Bhatia S. Development and Integration of Genome-Wide Polymorphic Microsatellite Markers onto a Reference Linkage Map for Constructing a High-Density Genetic Map of Chickpea. PloS one. 2015; 10(5):e0125583.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	chickpea-ICC4958xPI489777-RIL-2015	LG3	N/A	42.46	CaGMS1171	View
2	chickpea-ICC4958xPI489777-RIL-2015-2	LG8	N/A	116.3	CaGMS1171	View
3	Chickpea-ICC4958/PI489777-RIL-2020	LG08	N/A	100.65	CaGMS1171	View