CaGMS1281, CaGMS1281 (genetic_marker) Cicer sp. | PulseDB

Marker Overview

Marker Overview


Name	CaGMS1281
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(AT)10
Primer 1	CaGMS1281.Forward primer: TAATGCAGTGGATGCTACGG
Primer 2	CaGMS1281.Reverse primer: TTATTTTTGGGATCAACCACG
Product Length	207
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
scaffold674	supercontig	scaffold674:483985..484197 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
scaffold674	chromosome	scaffold674:483985..484197 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2015	Khajuria YP, Saxena MS, Gaur R, Chattopadhyay D, Jain M, Parida SK, Bhatia S. Development and Integration of Genome-Wide Polymorphic Microsatellite Markers onto a Reference Linkage Map for Constructing a High-Density Genetic Map of Chickpea. PloS one. 2015; 10(5):e0125583.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	chickpea-ICC4958xPI489777-RIL-2015	LG4	N/A	31.41	CaGMS1281	View
2	chickpea-ICC4958xPI489777-RIL-2015-2	LG8	N/A	116.2	CaGMS1281	View
3	Chickpea-ICC4958/PI489777-RIL-2020	LG08	N/A	100.81	CaGMS1281	View