CaTMS577, CaTMS577 (genetic_marker) Cicer sp. | PulseDB

Marker Overview

Marker Overview


Name	CaTMS577
Genbank ID	N/A
Type	SSR
Species	Cicer sp.
Repeat Motif	(GAA)6
Primer 1	CaTMS577.Forward primer: TAATGAAAATTGTGGGAGAAG
Primer 2	CaTMS577.Reverse primer: TGACCCTCTTGTCATACTCAT
Product Length	153
Publication	[view all]

Alignments

The following features are aligned


Feature Name	Type	Location	Analysis	Reference
Ca6	chromosome	Ca6:6540055..6540207 .	Cicer arietinum CDC Frontier genome v1.0	PCD marker alignment to genome using primer sequences
chr6	chromosome	chr6:6540055..6540207 .	Cicer arietinum CDC Frontier NCBI RefSeq v1	PCD marker alignment to genome using primer sequences
scaffold_1194	supercontig	scaffold_1194:1170..1328 .	Phaseolus vulgaris G19833 genome v2.1	PCD marker alignment to genome using primer sequences
Pl02_G27455	supercontig	Pl02_G27455:47028288..47028431 .	Phaseolus lunatus cv. G27455 genome v1.0	PCD marker alignment to genome using primer sequences
Chr02_WLD	supercontig	Chr02_WLD:40704858..40705001 .	Phaseolus acutifolius acc. W6 15578 genome v2.0	PCD marker alignment to genome using primer sequences

Publications


Year	Publication
2015	Khajuria YP, Saxena MS, Gaur R, Chattopadhyay D, Jain M, Parida SK, Bhatia S. Development and Integration of Genome-Wide Polymorphic Microsatellite Markers onto a Reference Linkage Map for Constructing a High-Density Genetic Map of Chickpea. PloS one. 2015; 10(5):e0125583.

Map Positions


#	Map Name	Linkage Group	Bin	Position	Locus	MapViewer
1	chickpea-ICC4958xPI489777-RIL-2015	LG5	N/A	81.8	CaTMS577	View
2	chickpea-ICC4958xPI489777-RIL-2015-2	LG5	N/A	16.91	CaTMS577	View
3	Chickpea-ICC4958/PI489777-RIL-2020	LG05	N/A	106.11	CaTMS577	View